Gene
| Gene Model ID | pfu_aug2.0_310.1_00589 |
|---|---|
| Locus | scaffold310.1 : 282935 ... 308429 : - |
| To GenomeBrowser | scaffold310.1:282935..308429 |
| Genes list of scaffold | scaffold310.1 |
| Synonym | pfu_aug1.0_1203.1_36881 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_310.1_00589.t1 | 4 | 1 | zf-C3HC4_3 | 16 | 65 | 6.8e-06 | 25.6 | 5.1e-09 | 6.8e-06 | 25.6 |
| pfu_aug2.0_310.1_00589.t1 | 4 | 1 | zf-B_box | 18 | 42 | 5.1e-07 | 29.4 | 0.73 | 980.0 | -0.3 |
| pfu_aug2.0_310.1_00589.t1 | 2 | 1 | zf-RING_2 | 18 | 63 | 1.8e-06 | 27.6 | 1.3e-09 | 1.8e-06 | 27.6 |
| pfu_aug2.0_310.1_00589.t1 | 3 | 1 | zf-C3HC4_4 | 19 | 62 | 3.7e-08 | 33.1 | 2.7e-11 | 3.7e-08 | 33.1 |
| pfu_aug2.0_310.1_00589.t1 | 1 | 1 | zf-C3HC4 | 19 | 62 | 1.8e-07 | 30.6 | 1.4e-10 | 1.8e-07 | 30.6 |
| pfu_aug2.0_310.1_00589.t1 | 3 | 1 | zf-C3HC4_2 | 19 | 62 | 1.8e-06 | 27.8 | 1.3e-09 | 1.8e-06 | 27.8 |
| pfu_aug2.0_310.1_00589.t1 | 4 | 2 | zf-B_box | 57 | 64 | 5.1e-07 | 29.4 | 0.7 | 950.0 | -0.2 |
| pfu_aug2.0_310.1_00589.t1 | 4 | 3 | zf-B_box | 98 | 136 | 5.1e-07 | 29.4 | 3.8e-10 | 5.1e-07 | 29.4 |
| pfu_aug2.0_310.1_00589.t1 | 3 | 2 | zf-C3HC4_2 | 100 | 125 | 1.8e-06 | 27.8 | 2.3 | 3100.0 | -1.8 |
| pfu_aug2.0_310.1_00589.t1 | 4 | 2 | zf-C3HC4_3 | 100 | 124 | 6.8e-06 | 25.6 | 7.4 | 10000.0 | -3.7 |
| pfu_aug2.0_310.1_00589.t1 | 3 | 2 | zf-C3HC4_4 | 114 | 125 | 3.7e-08 | 33.1 | 1.2 | 1600.0 | -1.0 |
| pfu_aug2.0_310.1_00589.t1 | 4 | 3 | zf-C3HC4_3 | 281 | 285 | 6.8e-06 | 25.6 | 7.2 | 9700.0 | -3.7 |
| pfu_aug2.0_310.1_00589.t1 | 3 | 3 | zf-C3HC4_4 | 326 | 330 | 3.7e-08 | 33.1 | 8.8 | 12000.0 | -3.8 |
| pfu_aug2.0_310.1_00589.t1 | 3 | 3 | zf-C3HC4_2 | 326 | 330 | 1.8e-06 | 27.8 | 4.6 | 6200.0 | -2.7 |
| pfu_aug2.0_310.1_00589.t1 | 2 | 2 | zf-RING_2 | 326 | 330 | 1.8e-06 | 27.6 | 3.1 | 4200.0 | -2.4 |
| pfu_aug2.0_310.1_00589.t1 | 4 | 4 | zf-C3HC4_3 | 629 | 636 | 6.8e-06 | 25.6 | 3.9 | 5300.0 | -2.9 |
| pfu_aug2.0_310.1_00589.t1 | 4 | 4 | zf-B_box | 630 | 637 | 5.1e-07 | 29.4 | 1.5 | 2100.0 | -1.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_310.1_00589.t1 | gi|557025045|ref|XP_006012687.1| | PREDICTED: uncharacterized protein LOC102365804 [Latimeria chalumnae] | 3.0e-20 |
| pfu_aug2.0_310.1_00589.t1 | gi|260795691|ref|XP_002592838.1| | hypothetical protein BRAFLDRAFT_201537 [Branchiostoma floridae] | 5.0e-19 |
| pfu_aug2.0_310.1_00589.t1 | gi|597744539|ref|XP_007234321.1| | PREDICTED: uncharacterized protein LOC103028595 [Astyanax mexicanus] | 3.0e-18 |
| pfu_aug2.0_310.1_00589.t1 | gi|260820337|ref|XP_002605491.1| | hypothetical protein BRAFLDRAFT_92912 [Branchiostoma floridae] | 2.0e-17 |
| pfu_aug2.0_310.1_00589.t1 | gi|557006954|ref|XP_006004887.1| | PREDICTED: tripartite motif-containing protein 2-like [Latimeria chalumnae] | 5.0e-17 |
Transcript
| Transcript ID | pfu_aug2.0_310.1_00589.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_310.1_00589.t1 atgaattcatcccaaacgactgacgagtcagtttctttggaaagcgagcttacatgtcccatttgtttgggaatcttcaa cagtccagtttcactgccttgccttcatagtttttgctatgagtgcattagaaaagttcctacgcgtcaacttcaactta gagtggaagtcatttgtccgcaatgtagaagctcagcactccttcaaaatggcagatttgaagcactaccgaaaaatact actatagccaatatcattgaaatagaagaacggaggcgaacaaaatgcgagtcatccatttgtaaagtccatagaaagga gtatggcttagcttgcttcgactgctcagttgtgttgtgcacggagtgccttttcccagatcataaatctcacgacgtta gatccatatcacaagcacagaatagttatctggcagagcttaaaaccaaaacgattccacgactgaaacagctacaggca agcgtggataagaaacataaatggtggaataacgccgacaagaaaatgacggacttaatatgggaccaatgcgatgatat atctaagatgtttcaaaatctacgagcagaactaaaggaaaaagaaaatgaggttattgcagattttcgcaccaagcaca acaagaagagatcgactatgcaaaggaatctagataaggctaagtttgagttagaagaattgaacgggctgatcgcagag gccgggaaactgacagaatcggatcccttggagtcgatccagggttgtataaagcttagaactcggggatggggtttgta tggaagtactgttgttgctggtgatgagtatggtgatgtgtgtggacatgtttgtggtgatggtttgttctgtactgata tattacctttgacatgtcttaccttggactatgactggaggatgggaattgtatggagatactactggtggtgctggcct gggtatggtgatatgtgtggacatgtgtttgtggttctgaggtttggactgggcccttcatcgactcccgtcgacacagt cagtcagaatacactggtacaaaaaggctgtatagattggtcaagtaccatgccgagtgtccgtctggtgaaagagtccc taaggggcagtccacctccgggatacaccacaccttctggatatcggtcaaaatctgtggattctgaccaagataatgta gccaaatctgtggatatggcaaatcaaaatgacgacttagtatcagtacatatagagggaggtatctcagattttgacac taattctcccaagcgtcgacgatctccatctcccgtgcggatatggtcattatccatatttgtcattgtcacttgcccag tagggggaagattaaaacacttccttcaaaattgggaatgtataactcaagatccctgggtactagaggctgtaaaggga gtaaagttagatttcgtagaaattccaacacagttaaacattcctttccagtacacaggctccccagaaaatgcatcact gatagctcaagaggtcaaagatctccaagaaaaaaatgcagttcaggtttcagtggcaaaaccagactctggaattcagt tcccttccattcggagtgtcggtagccccatcaattttcacaaaactaatgaaaatccccatagggttcttaagacgcct aggctgcagattaatcttctacctggacgacattttgatcatgaaccgaagtgctcagggtctaaaacgcgatctgaatt taacgattcatgttcttacatctctggggttcgtaataaattacaagaaatccgagttggaaccctcccaatgtctagag tatctgggatttcagataaataccaaaccaagatcaaagacatacggaaaaattgtcagaaatgtcaagatctaaaactg gcttctgttcgtcaaatttccgaaattatcggaaaattgtcagtctccacaaaggctatatttcccgctcctctccatta ccgttttcttcaaatgttgaaaacagaagccttatctccccttggagattacgactccttgatcgaactaagcccggagg tgaaaaacgaactaaggtggtgggtagcgaacatagaagtttggaatggaagaaagataactccaccaaattcagagcgc aatcgcaacaaacgcgttacttcacccgtggctaggcaggaatgcgtatgcgtttcctccgttctgtctgatctgtcaat gcatagtgaaagttcgatcggagcaatgcgagatagtgctggtgactcctgcgtggcagacgcaagtttggtatcccatc ttctgagcatgtcgatcaagcctcctctgttacttccggtgacagaaacgcttctagcctccccgatcgagggaattcat cccctggtgctgaatcgaacattacaactagtcgcctggaagttatcgggggacgatatgaaaggatcggactttcagaa aacgttagatcacttattcttgggtcataccgaaatggtacaaacagggcttaccagagtgcctggagtaaatgggtcgg ctggtgtcgtgaacgacagattactcccttttcagcttccttaa |
|
Protein
| Protein ID | pfu_aug2.0_310.1_00589.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_310.1_00589.t1 MNSSQTTDESVSLESELTCPICLGIFNSPVSLPCLHSFCYECIRKVPTRQLQLRVEVICPQCRSSALLQNGRFEALPKNT TIANIIEIEERRRTKCESSICKVHRKEYGLACFDCSVVLCTECLFPDHKSHDVRSISQAQNSYLAELKTKTIPRLKQLQA SVDKKHKWWNNADKKMTDLIWDQCDDISKMFQNLRAELKEKENEVIADFRTKHNKKRSTMQRNLDKAKFELEELNGLIAE AGKLTESDPLESIQGCIKLRTRGWGLYGSTVVAGDEYGDVCGHVCGDGLFCTDILPLTCLTLDYDWRMGIVWRYYWWCWP GYGDMCGHVFVVLRFGLGPSSTPVDTVSQNTLVQKGCIDWSSTMPSVRLVKESLRGSPPPGYTTPSGYRSKSVDSDQDNV AKSVDMANQNDDLVSVHIEGGISDFDTNSPKRRRSPSPVRIWSLSIFVIVTCPVGGRLKHFLQNWECITQDPWVLEAVKG VKLDFVEIPTQLNIPFQYTGSPENASLIAQEVKDLQEKNAVQVSVAKPDSGIQFPSIRSVGSPINFHKTNENPHRVLKTP RLQINLLPGRHFDHEPKCSGSKTRSEFNDSCSYISGVRNKLQEIRVGTLPMSRVSGISDKYQTKIKDIRKNCQKCQDLKL ASVRQISEIIGKLSVSTKAIFPAPLHYRFLQMLKTEALSPLGDYDSLIELSPEVKNELRWWVANIEVWNGRKITPPNSER NRNKRVTSPVARQECVCVSSVLSDLSMHSESSIGAMRDSAGDSCVADASLVSHLLSMSIKPPLLLPVTETLLASPIEGIH PLVLNRTLQLVAWKLSGDDMKGSDFQKTLDHLFLGHTEMVQTGLTRVPGVNGSAGVVNDRLLPFQLP |
|