Gene
| Gene Model ID | pfu_aug2.0_3100.1_02325 |
|---|---|
| Locus | scaffold3100.1 : 21936 ... 46850 : + |
| To GenomeBrowser | scaffold3100.1:21936..46850 |
| Genes list of scaffold | scaffold3100.1 |
| Synonym | pfu_aug1.0_28191.1_26412 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| clathrin heavy chain 2 isoform x2 | GO:0005198 GO:0006886 GO:0016192 GO:0030130 GO:0030132 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3100.1_02325.t1 | 5 | 1 | Clathrin_propel | 18 | 29 | 2.6e-06 | 27.3 | 1.0 | 15000.0 | -3.6 |
| pfu_aug2.0_3100.1_02325.t1 | 5 | 2 | Clathrin_propel | 55 | 73 | 2.6e-06 | 27.3 | 0.034 | 500.0 | 1.3 |
| pfu_aug2.0_3100.1_02325.t1 | 5 | 3 | Clathrin_propel | 97 | 122 | 2.6e-06 | 27.3 | 0.00015 | 2.3 | 8.7 |
| pfu_aug2.0_3100.1_02325.t1 | 5 | 4 | Clathrin_propel | 140 | 166 | 2.6e-06 | 27.3 | 0.0013 | 19.0 | 5.8 |
| pfu_aug2.0_3100.1_02325.t1 | 5 | 5 | Clathrin_propel | 197 | 225 | 2.6e-06 | 27.3 | 0.0022 | 33.0 | 5.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3100.1_02325.t1 | gi|676449406|ref|XP_009052044.1| | hypothetical protein LOTGIDRAFT_187812 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_3100.1_02325.t1 | gi|524899313|ref|XP_005106091.1| | PREDICTED: clathrin heavy chain 1-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_3100.1_02325.t1 | gi|524899315|ref|XP_005106092.1| | PREDICTED: clathrin heavy chain 1-like isoform X2 [Aplysia californica] | 0.0 |
| pfu_aug2.0_3100.1_02325.t1 | gi|556958778|ref|XP_005990225.1| | PREDICTED: clathrin heavy chain 1-like [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_3100.1_02325.t1 | gi|327280910|ref|XP_003225194.1| | PREDICTED: clathrin heavy chain 2 isoform X4 [Anolis carolinensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_3100.1_02325.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3100.1_02325.t1 atgttgccaaagattggagtatcgtctgaaaatgtgacctggaacagagtgaccttgacctcggatcgctggatcacgat ccgacacaatattgataaggtgaacagtcggcctggggtgactgtcgtcaacccacgtgacggtacaactcactactcag atgatactgatgctgactcggtacagatgaaccctaccttacccaaactggcgtttaaaaatgggctgaggtttgaggtg tttaacattgagaccaaggagaccatcagtaagtccaagcttcatgaacctgttatattctggacatggctgaattcgga aatcatcgccatggtaacagaatcttttgtttaccactgggacctttgtcaagctgattgttccccagagaagatgttta tgcgtcataacagattggcgtttagcgagatcatcagctacaaggccgatccaagtctgaaatggctagctctgacggga ctcacacctgaggaagacaggataaccgggattacccagctttataacgtagacgaggatataacacagtgtatcggggc tcacacggtatgcttctcggagtaccattatgcagataaccctatgccatccaccgtcatgtgtgctgcatctagagacg cgcttgatcatggaaaagtccatgttatagagttgggtccatacaaacaaggcaacttcgctccaagaaacaattatgat gtgctccagtattttgatgatgtggagagatttgattttccagtctcactgcataaacacagggtgtgtaaagaatcacc agggctggccagatttagctacgctcaatcctgctctgtgccaaatatagctactcgtagcagtaccacaggcattattt atgttacaatgttcgaagcttttacccgtcccaaatacctgtatcttaatgtctattattctcaatgttggcgtgatgtc acacaaagattccgttag |
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Protein
| Protein ID | pfu_aug2.0_3100.1_02325.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3100.1_02325.t1 MLPKIGVSSENVTWNRVTLTSDRWITIRHNIDKVNSRPGVTVVNPRDGTTHYSDDTDADSVQMNPTLPKLAFKNGLRFEV FNIETKETISKSKLHEPVIFWTWLNSEIIAMVTESFVYHWDLCQADCSPEKMFMRHNRLAFSEIISYKADPSLKWLALTG LTPEEDRITGITQLYNVDEDITQCIGAHTVCFSEYHYADNPMPSTVMCAASRDALDHGKVHVIELGPYKQGNFAPRNNYD VLQYFDDVERFDFPVSLHKHRVCKESPGLARFSYAQSCSVPNIATRSSTTGIIYVTMFEAFTRPKYLYLNVYYSQCWRDV TQRFR |
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