Gene
| Gene Model ID | pfu_aug2.0_3106.1_22283 |
|---|---|
| Locus | scaffold3106.1 : 17026 ... 29511 : + |
| To GenomeBrowser | scaffold3106.1:17026..29511 |
| Genes list of scaffold | scaffold3106.1 |
| Synonym | pfu_aug1.0_257.1_50757 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| eukaryotic translation initiation factor 3 subunit l | GO:0003743 GO:0005515 GO:0005852 GO:0006413 GO:0016020 GO:0031981 GO:0044822 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3106.1_22283.t1 | 2 | 1 | Paf67 | 128 | 279 | 0.0 | 317.0 | 0.0 | 0.0 | 213.1 |
| pfu_aug2.0_3106.1_22283.t1 | 2 | 2 | Paf67 | 278 | 385 | 0.0 | 317.0 | 1.1e-35 | 1.6e-31 | 109.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3106.1_22283.t1 | gi|586469464|ref|XP_006865333.1| | PREDICTED: eukaryotic translation initiation factor 3 subunit L [Chrysochloris asiatica] | 0.0 |
| pfu_aug2.0_3106.1_22283.t1 | gi|395820278|ref|XP_003804137.1| | 0.0 | |
| pfu_aug2.0_3106.1_22283.t1 | gi|402884188|ref|XP_003905570.1| | PREDICTED: eukaryotic translation initiation factor 3 subunit L [Papio anubis] | 0.0 |
| pfu_aug2.0_3106.1_22283.t1 | gi|578837252|ref|XP_006724323.1| | PREDICTED: eukaryotic translation initiation factor 3 subunit L isoform X1 [Homo sapiens] | 0.0 |
| pfu_aug2.0_3106.1_22283.t1 | gi|109094135|ref|XP_001090065.1| | PREDICTED: eukaryotic translation initiation factor 3 subunit L-like isoform 2 [Macaca mulatta] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_3106.1_22283.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3106.1_22283.t1 atggaccatacatgcacgtttcagtattatcccccttacccacctccggggatggagccgtatgaaatgcacacaggtga tccaaggcaggacttggaatatgagagacaataccagcagtccagctacattgtacctgacatcatcaaaagcttcctta catacttccaaaaaagtgtggcggaacagaacgtttttgagattcagaatgcatatgaaaatggctttaacaagcttaca gagaggtttttcaagacttcaccatggccagaggctgaagtagtttctccaatagtaggaggagataacctgtttttgat tttgtacaaagagctgtactacagacatatttatgcacgagtgacaaatggacccactttagagcaaagatttgaatcct actacaactattgcaatctctttaattttattctgaatgcagatggccccgttcatctggaattacccaatcagtggctg tgggacattatagatgaattcatttatcagtttcagtgcttcagtatataccgctgtaaagtcagcaagaaatcggaaga agaaatcaacttcctaagagcaaatcccaagatctggaatgtacacagtgtcctgaatgtactacactcattagtagaca aatcaaatatcaacaaacagctggaagtgtataccagtggaggtgatcctgagagtgtggctggtgagtttggacagcgt tccctgtacaagatgttgggatattttagccttgtgggactgctcagacttcattccttacttggagattattaccaggc cctcaaagttctggaatgcattgattttaacaaacagatcacaaaaatgaacgacaagatgtacacattactggccatct gtctggtcctacatcccatgaggatagacgagagtgttcactcacaactcagagaaaagttccaggataagatgcttagg atgcagaagggagatttggaggagtttcaaaacaacttttcctttgcttgtcctaagttcctatcacctgtacccccaaa ctatgatgcaatgtctgccatcaatcataaagaacctttcatgcttcaacttaaagtgttcatagaggaggtgactcagc agataacgttaccaactataaggaggttagtaacagtacatgtattattataa |
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Protein
| Protein ID | pfu_aug2.0_3106.1_22283.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3106.1_22283.t1 MDHTCTFQYYPPYPPPGMEPYEMHTGDPRQDLEYERQYQQSSYIVPDIIKSFLTYFQKSVAEQNVFEIQNAYENGFNKLT ERFFKTSPWPEAEVVSPIVGGDNLFLILYKELYYRHIYARVTNGPTLEQRFESYYNYCNLFNFILNADGPVHLELPNQWL WDIIDEFIYQFQCFSIYRCKVSKKSEEEINFLRANPKIWNVHSVLNVLHSLVDKSNINKQLEVYTSGGDPESVAGEFGQR SLYKMLGYFSLVGLLRLHSLLGDYYQALKVLECIDFNKQITKMNDKMYTLLAICLVLHPMRIDESVHSQLREKFQDKMLR MQKGDLEEFQNNFSFACPKFLSPVPPNYDAMSAINHKEPFMLQLKVFIEEVTQQITLPTIRRLVTVHVLL |
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