Gene
| Gene Model ID | pfu_aug2.0_3107.1_25636 |
|---|---|
| Locus | scaffold3107.1 : 29516 ... 44275 : - |
| To GenomeBrowser | scaffold3107.1:29516..44275 |
| Genes list of scaffold | scaffold3107.1 |
| Synonym | pfu_aug1.0_4507.1_37910 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| tumor suppressor candidate 3 | GO:0043231 GO:0044444 GO:0044699 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3107.1_25636.t2 | 2 | 1 | OST3_OST6 | 160 | 270 | 0.0 | 165.8 | 2.49992e-42 | 1.8e-38 | 131.6 |
| pfu_aug2.0_3107.1_25636.t2 | 2 | 2 | OST3_OST6 | 301 | 358 | 0.0 | 165.8 | 3.2e-12 | 2.4e-08 | 33.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3107.1_25636.t2 | gi|612029156|ref|XP_007495692.1| | PREDICTED: tumor suppressor candidate 3 isoform X2 [Monodelphis domestica] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_3107.1_25636.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3107.1_25636.t1 atggcatcaacagggaagacgttgctgttaatcctcagcatttttatagccgttagcttgatcgactcggtaataaagaa aaaagaggactccctgaatgacaaagttcagcagcttatggaatggaacaacaagaagtctgtcataaaactaaacggag acaagttcaagcagtacctcaaaaccagtcccagaaactactctgttattcttatgctgacagccctacagccacaaaga cagtgctccgtgtgcaaacaagctaacgacgagtaccagatattagcaaactcatggagatactcccagcagtatgctaa cagactgttctttgctatggtggattatgatgatggacctgatgttttctcatccatgaagataaacactgcccctgtat ttatgcacttcccacccaagggtaaacctaagaagggggataccctggacatccatagggttgggtttgctgcagaacag atagctaaatgggtaggagagaggactgacatacagattcgagtgttccgtccaccaaattattctggcactttggcctt ggctttgttatttgcacttgttggaggacttctatacctgaaaagaaataatcttgaattcctgtacaataaaacgttct ggggagttggatctctttttatcatatttgcaatgacgtcaggacaaatgtggaaccacatcagggggccgcctgtaatg cacaaaaatccacaaactggccagattcttgagttaattgtagagcacacaaatcctaatgaccagacactgcttgagtc attccttatcgttatcatttatgctgcagtcgtagcagggtttgtactactgaatgaggccaacaaccagaaaggtgatg ctggcaagaaaaaagttttgtccctggtaggactaggatgtgtagctatcttcttcagtctactactgtctgtgttcagg tcaaagtaccaaggttatccttatagtttcctgttcaaataa |
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| Transcript ID | pfu_aug2.0_3107.1_25636.t2 |
| Definition | - |
>pfu_aug2.0_3107.1_25636.t2 atggcatcaacagggaagacgttgctgttaatcctcagcatttttatagccgttagcttgatcgactcggtaataaagaa aaaagaggactccctgaatgacaaagttcagcagcttatggaatggaacaacaagaagtctgtcataaaactaaacggag acaagttcaagcagtacctcaaaaccagtcccagaaactactctgttattcttatgctgacagccctacagccacaaaga cagtgctccgtgtgcaaacaagctaacgacgagtaccagatattagcaaactcatggagatactcccagcagtatgctaa cagactgttctttgctatggtggattatgatgatggacctgatgttttctcatccatgaagataaacactgcccctgtat ttatgcacttcccacccaagggtaaacctaagaagggggataccctggacatccatagggttgggtttgctgcagaacag atagctaaatgggtaggagagaggactgacatacagattcgagtgttccgtccaccaaattattctggcactttggcctt ggctttgttatttgcacttgttggaggacttctatacctgaaaagaaataatcttgaattcctgtacaataaaacgttct ggggagttggatctctttttatcatatttgcaatgacgtcaggacaaatgtggaaccacatcagggggccgcctgtaatg cacaaaaatccacaaactggccagattaattatatccatggaagcagccaagggcaatttatagcagaaacttacattgt ttttattctaacgtcagcacattttgtgtgtccacacacctgtgctacatgttacatgttaggtaaaacatgtaaagcac ttgagttaattgtagagcacacaaatcctaatgaccagacactgcttgagtcattccttatcgttatcatttatgctgca gtcgtagcagggtttgtactactgaatgaggccaacaaccagaaaggtgatgctggcaagaaaaaagttttgtccctggt aggactaggatgtgtagctatcttcttcagtctactactgtctgtgttcaggtcaaagtaccaaggttatccttatagtt tcctgttcaaataa |
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Protein
| Protein ID | pfu_aug2.0_3107.1_25636.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3107.1_25636.t1 MASTGKTLLLILSIFIAVSLIDSVIKKKEDSLNDKVQQLMEWNNKKSVIKLNGDKFKQYLKTSPRNYSVILMLTALQPQR QCSVCKQANDEYQILANSWRYSQQYANRLFFAMVDYDDGPDVFSSMKINTAPVFMHFPPKGKPKKGDTLDIHRVGFAAEQ IAKWVGERTDIQIRVFRPPNYSGTLALALLFALVGGLLYLKRNNLEFLYNKTFWGVGSLFIIFAMTSGQMWNHIRGPPVM HKNPQTGQILELIVEHTNPNDQTLLESFLIVIIYAAVVAGFVLLNEANNQKGDAGKKKVLSLVGLGCVAIFFSLLLSVFR SKYQGYPYSFLFK |
|
| Protein ID | pfu_aug2.0_3107.1_25636.t2 |
| Definition | - |
>pfu_aug2.0_3107.1_25636.t2 MASTGKTLLLILSIFIAVSLIDSVIKKKEDSLNDKVQQLMEWNNKKSVIKLNGDKFKQYLKTSPRNYSVILMLTALQPQR QCSVCKQANDEYQILANSWRYSQQYANRLFFAMVDYDDGPDVFSSMKINTAPVFMHFPPKGKPKKGDTLDIHRVGFAAEQ IAKWVGERTDIQIRVFRPPNYSGTLALALLFALVGGLLYLKRNNLEFLYNKTFWGVGSLFIIFAMTSGQMWNHIRGPPVM HKNPQTGQINYIHGSSQGQFIAETYIVFILTSAHFVCPHTCATCYMLGKTCKALELIVEHTNPNDQTLLESFLIVIIYAA VVAGFVLLNEANNQKGDAGKKKVLSLVGLGCVAIFFSLLLSVFRSKYQGYPYSFLFK |
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