Gene
| Gene Model ID | pfu_aug2.0_3107.1_25637 |
|---|---|
| Locus | scaffold3107.1 : 45516 ... 54604 : + |
| To GenomeBrowser | scaffold3107.1:45516..54604 |
| Genes list of scaffold | scaffold3107.1 |
| Synonym | pfu_aug1.0_4507.1_37909 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| zeta-sarcoglycan isoform x2 | GO:0005886 GO:0044425 GO:0044707 GO:0044763 GO:0061061 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3107.1_25637.t1 | 1 | 1 | Sarcoglycan_1 | 22 | 277 | 0.0 | 232.4 | 0.0 | 0.0 | 232.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3107.1_25637.t1 | gi|676446789|ref|XP_009051195.1| | hypothetical protein LOTGIDRAFT_205347 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_3107.1_25637.t1 | gi|532039463|ref|XP_005362591.1| | PREDICTED: zeta-sarcoglycan [Microtus ochrogaster] | 0.0 |
| pfu_aug2.0_3107.1_25637.t1 | gi|505830165|ref|XP_004610380.1| | PREDICTED: zeta-sarcoglycan [Sorex araneus] | 0.0 |
| pfu_aug2.0_3107.1_25637.t1 | gi|602730836|ref|XP_007450826.1| | PREDICTED: zeta-sarcoglycan [Lipotes vexillifer] | 0.0 |
| pfu_aug2.0_3107.1_25637.t1 | gi|524924882|ref|XP_005066687.1| | PREDICTED: zeta-sarcoglycan isoform X1 [Mesocricetus auratus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_3107.1_25637.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3107.1_25637.t1 atgggtaaaggacggcacacaagtaacggtgacttaacccaggatgcttcctaccgtacccagccggtcgggatatacgg ctggagaaagcgatgtctgtatgctgtcatactcttccttgtggtggtcactgtcattaatctagcactgattgtttgga ttctacgtgtactcaacttttctgtgcatggtatgggtaaaatgaggatgacagaggatggaatgagactagagggacgg ggagaattcttagataatctgtatgttcaggaacttagatctcaatctaataaaccattgtatgtggagtccagtaaaga cattgtcatgagagcacgggatgaagagctaaacatctctagtgtccttactcttgggaacaaaaaaattcaagcccagt gtgaaaattttgaggtgaaggacaagtatggtacgactcgtttccaggtttcagataaaggagttaatatagcagtagag gaagtatactataccggtacatctaaagcctccttcaatgcctccatagagactcccactatcagaggaccaagaacaaa tccacttagtatagaagccctgagtacatcattacttatgtatgcatcagatgaagtacagattaattccaagactggca gtataggtctaatggcagccaatgaaatagctttgatatccaaagatataatttccttggattctgagaatatcttcctc aagaatcttccaacatcgtcagtaaatagcggacaacaaagtggacgtgtttatcagctctgcatgtgccaccgcacggg tcgactgttcctggcgccccctggtggaggatgccaagcaagcaaagacatatgtagataa |
|
Protein
| Protein ID | pfu_aug2.0_3107.1_25637.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3107.1_25637.t1 MGKGRHTSNGDLTQDASYRTQPVGIYGWRKRCLYAVILFLVVVTVINLALIVWILRVLNFSVHGMGKMRMTEDGMRLEGR GEFLDNLYVQELRSQSNKPLYVESSKDIVMRARDEELNISSVLTLGNKKIQAQCENFEVKDKYGTTRFQVSDKGVNIAVE EVYYTGTSKASFNASIETPTIRGPRTNPLSIEALSTSLLMYASDEVQINSKTGSIGLMAANEIALISKDIISLDSENIFL KNLPTSSVNSGQQSGRVYQLCMCHRTGRLFLAPPGGGCQASKDICR |
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