Gene
| Gene Model ID | pfu_aug2.0_314.1_13982 |
|---|---|
| Locus | scaffold314.1 : 247050 ... 256198 : - |
| To GenomeBrowser | scaffold314.1:247050..256198 |
| Genes list of scaffold | scaffold314.1 |
| Synonym | pfu_aug1.0_17077.1_61679 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| neuronal acetylcholine receptor subunit alpha-6 | GO:0006811 GO:0016020 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_314.1_13982.t1 | 1 | 1 | Neur_chan_LBD | 21 | 215 | 2.40042e-42 | 144.5 | 1.4013e-45 | 4.30058e-42 | 143.6 |
| pfu_aug2.0_314.1_13982.t1 | 1 | 1 | Neur_chan_memb | 222 | 386 | 4.7e-16 | 59.4 | 1.9e-19 | 7.2e-16 | 58.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_314.1_13982.t1 | gi|505795824|ref|XP_004606890.1| | PREDICTED: neuronal acetylcholine receptor subunit alpha-6 isoform X1 [Sorex araneus] | 0.0 |
| pfu_aug2.0_314.1_13982.t1 | gi|395857469|ref|XP_003801114.1| | PREDICTED: neuronal acetylcholine receptor subunit alpha-6 isoform X1 [Otolemur garnettii] | 0.0 |
| pfu_aug2.0_314.1_13982.t1 | gi|733926421|ref|XP_010724262.1| | PREDICTED: neuronal acetylcholine receptor subunit alpha-6 [Meleagris gallopavo] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_314.1_13982.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_314.1_13982.t1 atggagactttatcggaaccgacgaaaactgattacgagaatgttgtgagagaaatatttaccacaaataattataacaa aaagatcctaccgaggaatgggacggaacctgtttttcttgatttaagtttttatttcctcggaataaatgaaattgacg aggtgaaagagaagatggtcaccactggttacttggtcatttcgtggctggacagtggtctgaaatgggaccaggccgct cacaacgacttagaggagatttttgtcccccaagacgacatttggaaaccggacatatttctacaaaatggattcaagaa attttcggaactcggtggttcttactactatattcaagtgtactccaatggatacacagagtggatgccgttcgaggtat tcgaaagtaggtgctccgtcgatacgagtaattacccgtttgacaaacaaaactgcagcatctctttcgtcgtctggagc tattctgttgcagaggttgaaatcgagaaaagcaaacaaggcataatatatgacgaacaattccaagaaaacagcgtctg ggacattttatccgtgtcctacgatgtcagcaaagagacgagagagtctaaaattacattttccttcaatttgagaagaa aaccactctactatgttgtaaatataatacttccggttatatttcttggatttctcagcggacttgtatttgttattcca gctgacacaggagagaaatcaggttattccgtgacagtctttcttgctttggcagtttttctgactatcataagcgcgct acttccggtgaactctgaaaaagtttccattctaggaatttatctgctcatgcaggtgatctcaggtgttgttgtcctta tgatatcaactttccagctcaggttaaatttcagaggtccatcatatccggtgaccggtattttcctgaaaataaccaaa ttccaaaggaggctttgttgttgctgtcatagcgcgggaaattcaaatcgtgttgagaacctgaatactactattctgcc aaaaacggagaagcaaaatccggagaatatggagaaggacgttaatgtagaagactctgaacctatgagtgcttcaaacg gatctaaaaaaaggaaaaataagaataaaaacaaaaatttgagtggtgaaagtgtaaataaactacaggtgacatcagct cagttttatagtccgatacctaggatctccagtatgagcgtggacaatacgtattcactacctgcaccgcagttgattaa tccaatcaatcaatcgacacctttgggacataattatggtgttcaaccacagggacagatgcacggatttgtaaatggta cttttatatcacccactacacagggtctgccagtggattttaattccaaatttgatgttatttcgcggaaactagatggt gtgacagaacaattacgtaaacttgacctcatggatcaacgacttacgaaccttgaagtggctacgaaatcaattcaaag tgatataacgggcctgaaaggtaacatgtcggagatggacaagagctttagctttctgaatgaccagtttgagaaaaata aagaggaactacacggaaatacaggggataataatcatagtttgaaatacgagactttctatagtaagattcttgatata ggctatatataa |
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Protein
| Protein ID | pfu_aug2.0_314.1_13982.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_314.1_13982.t1 METLSEPTKTDYENVVREIFTTNNYNKKILPRNGTEPVFLDLSFYFLGINEIDEVKEKMVTTGYLVISWLDSGLKWDQAA HNDLEEIFVPQDDIWKPDIFLQNGFKKFSELGGSYYYIQVYSNGYTEWMPFEVFESRCSVDTSNYPFDKQNCSISFVVWS YSVAEVEIEKSKQGIIYDEQFQENSVWDILSVSYDVSKETRESKITFSFNLRRKPLYYVVNIILPVIFLGFLSGLVFVIP ADTGEKSGYSVTVFLALAVFLTIISALLPVNSEKVSILGIYLLMQVISGVVVLMISTFQLRLNFRGPSYPVTGIFLKITK FQRRLCCCCHSAGNSNRVENLNTTILPKTEKQNPENMEKDVNVEDSEPMSASNGSKKRKNKNKNKNLSGESVNKLQVTSA QFYSPIPRISSMSVDNTYSLPAPQLINPINQSTPLGHNYGVQPQGQMHGFVNGTFISPTTQGLPVDFNSKFDVISRKLDG VTEQLRKLDLMDQRLTNLEVATKSIQSDITGLKGNMSEMDKSFSFLNDQFEKNKEELHGNTGDNNHSLKYETFYSKILDI GYI |
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