Gene
| Gene Model ID | pfu_aug2.0_314.1_13986 |
|---|---|
| Locus | scaffold314.1 : 331800 ... 336503 : + |
| To GenomeBrowser | scaffold314.1:331800..336503 |
| Genes list of scaffold | scaffold314.1 |
| Synonym | pfu_aug1.0_3301.1_44644 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| mitochondrial ubiquitin ligase activator of nfkb 1 | GO:0007005 GO:0009966 GO:0043170 GO:0044424 GO:0048519 GO:0048522 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_314.1_13986.t1 | 1 | 1 | GIDE | 98 | 251 | 2.5e-23 | 82.2 | 1.9e-26 | 4.8e-23 | 81.2 |
| pfu_aug2.0_314.1_13986.t1 | 1 | 1 | zf-C3HC4_3 | 308 | 353 | 1.6e-14 | 53.3 | 1.0e-17 | 2.5e-14 | 52.6 |
| pfu_aug2.0_314.1_13986.t1 | 1 | 1 | zf-C3HC4_2 | 310 | 347 | 3.6e-06 | 26.8 | 2.9e-09 | 7.2e-06 | 25.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_314.1_13986.t1 | gi|524916505|ref|XP_005113029.1| | PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_314.1_13986.t1 | gi|676447961|ref|XP_009051579.1| | hypothetical protein LOTGIDRAFT_208864 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_314.1_13986.t1 | gi|641714097|ref|XP_008146354.1| | PREDICTED: mitochondrial ubiquitin ligase activator of NFKB 1 [Eptesicus fuscus] | 0.0 |
| pfu_aug2.0_314.1_13986.t1 | gi|554529931|ref|XP_005859765.1| | PREDICTED: mitochondrial ubiquitin ligase activator of NFKB 1 [Myotis brandtii] | 0.0 |
| pfu_aug2.0_314.1_13986.t1 | gi|551494830|ref|XP_005798979.1| | PREDICTED: mitochondrial ubiquitin ligase activator of NFKB 1-like [Xiphophorus maculatus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_314.1_13986.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_314.1_13986.t1 atgaggattcttgatgcagttgacattggttccctggtggggatagggattgatgctcttgttgcctacgctctgtatag atatcataaaagttcagctagatcagtcgatgaagtgaagcgagtggagtgccatttaatagggcctgaactagtgagag aactagagaagcagccagacagaagtttaccttacgtttgcattgatggatttgtgtcgacagttgggaatgacgttagg agtcactatggagatcaaaggggagttctacagaatatctcactgatagaacacaagtccaagaggagtaacggagtctg gacagatgccaaaaatatcatcagagacgtctgggagtcagtgcctttctatctgcgatccatggtacatgaagaaccca ggattctcatcatagatccaaggtctgcaaagtatctggaagaagacttaacgacaacgtatgacaaatttgaaccaagt aagacgggaattgtgcagcgcggtattgatcggatagctggggaggtactgaaagggtatcatgaaacagagaggatgct actgaaaggaactcatcttgttggaattggacgattggttattgatggcaatgtaataaaactgagacctcctgaagatg ggcaaacctacatcctaaccaagaaaagccgggaggaaattatttctagtttgtcacacacgacaaatacgcttaaaatt tgcttgtatgtattcggtggtctgggctgtgtactgacgctattccttgtcgttagacttgtcaagaaattaatacggta catcaaagaccgtcgcatgcaggaacaactctatagagcccgagaacaagctgatgcagatagaatcgtacgttcacgaa gttcaaatgagcaatcagttgttgatctctccgatgatgctacaacctgtgtaatttgcctgaccaatcgtagagaagtc gttttgcttgactgtggacatgtttgtttatgtgcagactgtgttatcgctttacctcagccgaagaaatgtccgatttg tcgaagtagtgtatccagattcatacctgcctatatagcgtag |
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Protein
| Protein ID | pfu_aug2.0_314.1_13986.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_314.1_13986.t1 MRILDAVDIGSLVGIGIDALVAYALYRYHKSSARSVDEVKRVECHLIGPELVRELEKQPDRSLPYVCIDGFVSTVGNDVR SHYGDQRGVLQNISLIEHKSKRSNGVWTDAKNIIRDVWESVPFYLRSMVHEEPRILIIDPRSAKYLEEDLTTTYDKFEPS KTGIVQRGIDRIAGEVLKGYHETERMLLKGTHLVGIGRLVIDGNVIKLRPPEDGQTYILTKKSREEIISSLSHTTNTLKI CLYVFGGLGCVLTLFLVVRLVKKLIRYIKDRRMQEQLYRAREQADADRIVRSRSSNEQSVVDLSDDATTCVICLTNRREV VLLDCGHVCLCADCVIALPQPKKCPICRSSVSRFIPAYIA |
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