Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_3140.1_02344
Locus scaffold3140.1 : 47146 ... 51139 : +
To GenomeBrowser scaffold3140.1:47146..51139
Genes list of scaffold scaffold3140.1
Synonym pfu_aug1.0_7405.1_02435

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_3140.1_02344.t1 1 1 Mab-21 146 324 4.3e-39 134.3 5.00264e-43 7.4e-39 133.6

Transcript
Transcript IDpfu_aug2.0_3140.1_02344.t1
Definition-
>pfu_aug2.0_3140.1_02344.t1
atggatctttcaactcgattgagttatttatttggaacagaacaatatgttgatatgaggagacaactcgtcctactaag
ggagacagtgttgaactatttacgtcgtgaaaaaaaatttcatatcatatgtagtggaagtcttggtgagggtgtagcct
atccaagttctgatgatgacgtgatgatttctttgaagaactgtcgtatagtaatgtcatacagggaggctactcaggta
ggagatgtcctgatggtaccttctgagttctctcctggatactgtcgtctactggacgtgaggggatgttatcgtgagga
cgttacacatatgatacatggcatgccgtttgtttcgtcatcattattcaaacaacattttgcgactgaaggacaatata
ttcatggaccatgtcaagcagaaactcttggttatcacgagtatgactatgcttattgtattccctgttacacctggcct
gatatagccaatgactgggtaataagagaccgttctaattcttggccttcatgtgaaatgattcagaatattgtccgtaa
ctgttgtcacgtggtgcctgtaggtgatccagtcactccacatgccgatcatgaatggagaatatcattttccgtagcag
agaggacgctgattcattcattaagccatgtccagttcttagtatataatcttcttagattaacattgaaaagattaata
ggggaagcctttcctggagtgctttgctcctacttcatgaaaactacattattttatactattgagaatactcccaaaaa
tctgtggcaaatgaataacttagagacgtgttttaaagtttgtctttctgtactgtatgattatgttgatcatatacatt
gcccaaattatttcataccagagtataatatgatcaaacggaaaatcaaccaatcaaaccgtcgtcaaatattagacatg
ttaagaaccctccatgagactggcgttgttggaataatacatttaagtggaaactcatcttgtctgcgtgccagcttgtc
ggaaacattcatggaatataaactagacaaaggattcatgttttcctatcactttcttatagttctcttcgatattgaca
gtttcttcaacaagataccacatgaaaatattgcttgctgtatgttaaatttatatgaattttggagtgtgttgatgtgt
aatccaaccatctcagaaagttatttaaaatatattatttggaataatggaataaactcatgttgtcttaaactgatgga
tcaactattcatctcatcaggaatgaataaccaatattaccgactacataaaactctggagactctattgagaataggat
atagaggagatgtaacaaaagggaagcttacaatggctacctacttgtatatggttggtaaaacagaatcagctttatac
gtcatacagaaactgttatcagagtatccaccgtatgctattgattgctgtggagatgagctgaaaaggagaacatatat
agacatcatgtgtggtcggggatataccatggactacaagatacgacatgctcatgcaccacgatatcgtctaaacaaag
gctgtctgaatgctttcccttcacctctgaaaatatggataacaataatgaatgagtttccattagatcctctaacatac
gcgtacttcctggaaagtctttgtcatactcaacatcagaatccgatacgtttgatgaaatcattaaggtgtctcgttaa
ccacatgaatgatcagaaggtggacggtgacatcgtttatgccagaatgtgtgtgggtatcatcaagtgtgtacaggtcg
acaatcagtcagcatgtagatggtttggatcagcttacgtcatgaaggataccaaacctccaccattcaatgaaagaatg
tcgcgttcagctttgacatatattgcttgtttgctgaataagaaattccaatcggtcgaatga

Protein
Protein IDpfu_aug2.0_3140.1_02344.t1
Definition-
>pfu_aug2.0_3140.1_02344.t1
MDLSTRLSYLFGTEQYVDMRRQLVLLRETVLNYLRREKKFHIICSGSLGEGVAYPSSDDDVMISLKNCRIVMSYREATQV
GDVLMVPSEFSPGYCRLLDVRGCYREDVTHMIHGMPFVSSSLFKQHFATEGQYIHGPCQAETLGYHEYDYAYCIPCYTWP
DIANDWVIRDRSNSWPSCEMIQNIVRNCCHVVPVGDPVTPHADHEWRISFSVAERTLIHSLSHVQFLVYNLLRLTLKRLI
GEAFPGVLCSYFMKTTLFYTIENTPKNLWQMNNLETCFKVCLSVLYDYVDHIHCPNYFIPEYNMIKRKINQSNRRQILDM
LRTLHETGVVGIIHLSGNSSCLRASLSETFMEYKLDKGFMFSYHFLIVLFDIDSFFNKIPHENIACCMLNLYEFWSVLMC
NPTISESYLKYIIWNNGINSCCLKLMDQLFISSGMNNQYYRLHKTLETLLRIGYRGDVTKGKLTMATYLYMVGKTESALY
VIQKLLSEYPPYAIDCCGDELKRRTYIDIMCGRGYTMDYKIRHAHAPRYRLNKGCLNAFPSPLKIWITIMNEFPLDPLTY
AYFLESLCHTQHQNPIRLMKSLRCLVNHMNDQKVDGDIVYARMCVGIIKCVQVDNQSACRWFGSAYVMKDTKPPPFNERM
SRSALTYIACLLNKKFQSVE

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495