Gene
| Gene Model ID | pfu_aug2.0_315.1_17274 |
|---|---|
| Locus | scaffold315.1 : 10250 ... 12055 : - |
| To GenomeBrowser | scaffold315.1:10250..12055 |
| Genes list of scaffold | scaffold315.1 |
| Synonym | pfu_aug1.0_7679.1_24260 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_315.1_17274.t1 | 2 | 1 | zf-B_box | 11 | 49 | 1.2e-10 | 41.0 | 5.8e-14 | 1.2e-10 | 41.0 |
| pfu_aug2.0_315.1_17274.t1 | 4 | 1 | NHL | 322 | 344 | 1.7e-09 | 37.1 | 0.0011 | 2.4 | 8.2 |
| pfu_aug2.0_315.1_17274.t1 | 2 | 2 | zf-B_box | 327 | 353 | 1.2e-10 | 41.0 | 0.24 | 500.0 | 0.6 |
| pfu_aug2.0_315.1_17274.t1 | 4 | 2 | NHL | 394 | 396 | 1.7e-09 | 37.1 | 2.3 | 4900.0 | -2.2 |
| pfu_aug2.0_315.1_17274.t1 | 4 | 3 | NHL | 420 | 442 | 1.7e-09 | 37.1 | 1.7e-06 | 0.0037 | 17.1 |
| pfu_aug2.0_315.1_17274.t1 | 4 | 4 | NHL | 461 | 481 | 1.7e-09 | 37.1 | 4.2e-07 | 0.00088 | 19.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_315.1_17274.t1 | gi|260824866|ref|XP_002607388.1| | hypothetical protein BRAFLDRAFT_69798 [Branchiostoma floridae] | 4.0e-11 |
Transcript
| Transcript ID | pfu_aug2.0_315.1_17274.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_315.1_17274.t1 atgcgattatacggaccatcaaaaattgctgagcagtgctcacttcatcccgacaaagaaatatccatatactgcaaaga ttgccaagagccatgttgtgttacatgtctagtgcaaaaacacgaaggacataaaatttccaccatcgaagatgcatacc tatctgcagagaaaagattgaatgaaaacgcaaaggaactagagaaagatgttattccaacattggacaaaatgacggat gaaacgaagaagaaccgatctgaaaagataaaaatgattaacgaagctttagacgaagttaatgaattcagaattgaaat gaaacatgcagttgatttatcatgcgacagtcttctaaacatacttgatcaaaatgaaattgaatttgataaccttataa agagaatagatgcgcaaaagagaaaagttagggagatgataaaaggaatagaagaaataattcagaagggtaatttaagt atgataagatacttcccactttccccaaagaccctgatacctgatgtaagcatcccaaagctaactgtccccgtttttac tcctgggagggaaatattaaacattatcagagataggctaggggcaatagaatggatagataggacttctgatccaagac ataccgcttctcgagttacaagattcgatccatcaatgatctatataaccaaggtcgggtcctttactagttatattaat gcctcatccatcaccatagcaggtaacaatacagcctgggttatggcctatgtaagtgacaccatttatctgtatgacag tagtggtaagaagactaggtctatcaaagtgaaggataatgttggcatcaatgacatggtggtaagacggtcaggggaga tgattgttacatgtcaggataggaaagtaagacgtatatcagtgagtggtgaggtgtccacactgatagataggtcatca tttcagcctgaaggtgtatgtctgactgatagtgaggatgttgtagtgtgtatgaagtgtcagagtgggagggaccacgt gaccgtgtactcacatgatacatgtagaaagatacgcgagataaggggaatagatgataagggtaaacaacatatcacag atccttaccgtgttgttagtaatggtaagaatatgtgtgtggttaatggaaaccctagtaatgtagtatgtgtggatgag agaggtgatatgaggtggatgtatgatggtaaggaagctaaactatcaatagaatttaatccaatggggatttctgtaga taaatacaacaacctccttgtcactgatcactacaatcactgtgtgcattacatagacagggagggtaggttgatacaga tcatattgacacagaatgggttaacgtttccatggggaatctgtgtagatgataagacaggtgaagtgtgggttgggaat tgtgatttaaggtcgagaactgttgtagtatcgaagtatttatcatga |
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Protein
| Protein ID | pfu_aug2.0_315.1_17274.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_315.1_17274.t1 MRLYGPSKIAEQCSLHPDKEISIYCKDCQEPCCVTCLVQKHEGHKISTIEDAYLSAEKRLNENAKELEKDVIPTLDKMTD ETKKNRSEKIKMINEALDEVNEFRIEMKHAVDLSCDSLLNILDQNEIEFDNLIKRIDAQKRKVREMIKGIEEIIQKGNLS MIRYFPLSPKTLIPDVSIPKLTVPVFTPGREILNIIRDRLGAIEWIDRTSDPRHTASRVTRFDPSMIYITKVGSFTSYIN ASSITIAGNNTAWVMAYVSDTIYLYDSSGKKTRSIKVKDNVGINDMVVRRSGEMIVTCQDRKVRRISVSGEVSTLIDRSS FQPEGVCLTDSEDVVVCMKCQSGRDHVTVYSHDTCRKIREIRGIDDKGKQHITDPYRVVSNGKNMCVVNGNPSNVVCVDE RGDMRWMYDGKEAKLSIEFNPMGISVDKYNNLLVTDHYNHCVHYIDREGRLIQIILTQNGLTFPWGICVDDKTGEVWVGN CDLRSRTVVVSKYLS |
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