Gene
| Gene Model ID | pfu_aug2.0_315.1_17275 |
|---|---|
| Locus | scaffold315.1 : 17083 ... 41295 : - |
| To GenomeBrowser | scaffold315.1:17083..41295 |
| Genes list of scaffold | scaffold315.1 |
| Synonym | pfu_aug1.0_7679.1_24260 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_315.1_17275.t1 | 6 | 1 | SGL | 184 | 246 | 3.5e-09 | 36.4 | 0.0011 | 1.1 | 8.5 |
| pfu_aug2.0_315.1_17275.t1 | 8 | 1 | NHL | 249 | 267 | 2.4e-07 | 30.3 | 0.012 | 12.0 | 6.0 |
| pfu_aug2.0_315.1_17275.t1 | 6 | 2 | SGL | 299 | 333 | 3.5e-09 | 36.4 | 0.53 | 530.0 | -0.2 |
| pfu_aug2.0_315.1_17275.t1 | 8 | 2 | NHL | 309 | 325 | 2.4e-07 | 30.3 | 2.9 | 2800.0 | -1.5 |
| pfu_aug2.0_315.1_17275.t1 | 8 | 3 | NHL | 348 | 370 | 2.4e-07 | 30.3 | 6.7e-05 | 0.066 | 13.1 |
| pfu_aug2.0_315.1_17275.t1 | 6 | 3 | SGL | 349 | 385 | 3.5e-09 | 36.4 | 0.0005 | 0.49 | 9.7 |
| pfu_aug2.0_315.1_17275.t1 | 8 | 4 | NHL | 401 | 411 | 2.4e-07 | 30.3 | 0.027 | 26.0 | 4.9 |
| pfu_aug2.0_315.1_17275.t1 | 2 | 1 | zf-B_box | 435 | 477 | 3.2e-11 | 42.9 | 1.1e-07 | 0.00011 | 22.0 |
| pfu_aug2.0_315.1_17275.t1 | 2 | 2 | zf-B_box | 493 | 531 | 3.2e-11 | 42.9 | 6.3e-09 | 6.3e-06 | 25.9 |
| pfu_aug2.0_315.1_17275.t1 | 6 | 4 | SGL | 726 | 803 | 3.5e-09 | 36.4 | 0.018 | 17.0 | 4.6 |
| pfu_aug2.0_315.1_17275.t1 | 8 | 5 | NHL | 789 | 809 | 2.4e-07 | 30.3 | 0.031 | 31.0 | 4.7 |
| pfu_aug2.0_315.1_17275.t1 | 6 | 5 | SGL | 835 | 872 | 3.5e-09 | 36.4 | 1.1 | 1100.0 | -1.3 |
| pfu_aug2.0_315.1_17275.t1 | 8 | 6 | NHL | 863 | 871 | 2.4e-07 | 30.3 | 7.4 | 7300.0 | -2.8 |
| pfu_aug2.0_315.1_17275.t1 | 6 | 6 | SGL | 872 | 923 | 3.5e-09 | 36.4 | 0.00031 | 0.3 | 10.4 |
| pfu_aug2.0_315.1_17275.t1 | 8 | 7 | NHL | 887 | 909 | 2.4e-07 | 30.3 | 3.7e-05 | 0.036 | 14.0 |
| pfu_aug2.0_315.1_17275.t1 | 8 | 8 | NHL | 935 | 944 | 2.4e-07 | 30.3 | 1.5 | 1500.0 | -0.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_315.1_17275.t1 | gi|657577854|ref|XP_008292777.1| | PREDICTED: E3 ubiquitin-protein ligase TRIM33-like [Stegastes partitus] | 1.0e-10 |
| pfu_aug2.0_315.1_17275.t1 | gi|390347364|ref|XP_003726762.1| | PREDICTED: E3 ubiquitin-protein ligase TRIM71-like [Strongylocentrotus purpuratus] | 4.0e-10 |
Transcript
| Transcript ID | pfu_aug2.0_315.1_17275.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_315.1_17275.t1 atgcccacattggacaaaatgatgaacgaaacggagaagaaccgatctgaaaagagagaaataatcaaagaagttagaga cgaaataaatgcgttcagaatcgaaatgaaacaagcagttgatgtatcatgtgacaatcttctagaaactcttgatcaaa atgaagttgaatttgataatcttatcaagagattagatgctcaaaagagaaaagttaaggaactgataaaaggaatagaa gaaattattcagaagggtgatttaagtatgataaaacactccccaccctcccctgggaccctgatccctgaggtaagcac cccgaagctatctatccccgtctttactcctgggagagacatactgaccatcataagagataggataggaacaatagaat ggacagatagatcttctggtccaacagatacttcttccataacaaaatttgatccatcaatgatcaatataagcaaggtt gggtcctttaatagtaagattgttgccacatccatcaccacagcagggaacaatacagcctgggttatgtacagtgacag taacaccatgtatctgtatgacagtagtggtaaggaggttaggtctatcacagtgaagggtagtgagggtatcaatggca tggtgataacacggtcaggggagatgattgttacatgtaatgatagggaagtaagacgtgtatcagtgagtggtaaggtg tctacaatgatagatacttcaccatgtcagccttatggtctatgtctgactgatagtgaggatatagtagtgtgtatgag agatcagggtaggaggaatcacctagctgtgtattcacctgatactgttaaaaagatacgtgagataaggggaatggatg gtcaggggaaacaacagatcacagatccttaccgtgttgttagtaatggtaaggaactgtgtgtggttaattgggatcct ggtcatgtagtgtgtgtagatgagagaggtgatgtgaggtgggtgtatgatggtatggaggccaaactgtcaaggtcatt tgatccacgtgggatatctatagataaatataacaatctccttgtcactgattacaacaatgactgtgttcattacatag acagggatggtacgttgatacggattatactgacagaggaactgactaggttattaatacttacacacgatcagactggg ttatcagggccctgggggatctgtgtagatgatgagacagagagtcttctacaaaccatgagtgataacagtacaacgac cttccctactcagatagtggtaacttgtgggttttgtgatgggaccactgatgttaagtggttctgtaaatcgtgcgcgg catctatgtgcaacacatgtaaaacctcccacctcaagatcactgcattcaagaaccatgtcatagttcctcgtaccaat gacgtcatgcgattatacggaccatcaaaaattgctgaacattgccaattccatcttgaaaaggagatatcaacttactg caatggttgccaagtggcatgctgcacaacatgtcaagttcaaacccatcagaagcatgacatttccacgatagaagatg catacttatctgcagagaaaagactgaatgagaacgcaaagaaactagagaaagatgtaatgccaacattagacaaaatg atgaacgaaacggagatgaaccgatctgaaaagagagaaataatcaacgaagttagagacgaaataaatgcgttcaaaat cgaaatgaaacaagcagttgatgtatcatgtgacaatcttctagaaacacttgatcaaaatgaagttgaatttgataatc ttatcaagagattagatgctcaaaagagaaaaggtgatttaagtatgataaaacactccccaccctcccctgggaccctg atccctgaggtaagcaccccgaagctatctatccccgtctttactcctgggagggacatactgaccatcataagagatag gatagggacaatagaatggacagatagatcttctggtccaacagatacttcttccataacaaaatgtgatccatcaagga tcaatataagcaaggtcagttcctttagtagtaagatttgtgccacatccatcaccacagcaggtaacaatacagcctgg gttatgtacaatgacagtgacaccatgtatctgtatgacagtagtggtgaggtggttaggtctatcacagtgaagggtag taatggtatcaatggcttggtgataagacggtcaggggagatgactgttacaagtaaagataggaaaataagacgtgtat cagcgagtggtatggtgtctaatctgacagatacttctccatttaagccttatggtgtatgtctgactgatagtgaggat gttgtagtgtgtatgaggggtcagtatgaaaagaaccatttggccgtgtactcacctgatacaggtataaagatacgtga gataaggggtgtggatggtcagggaaaacaacagatagcagatccttaccgtgtggttagtaatggtaaggatctgtgtg tggttaattgggatcctggttatgtagtgtgtgtggatgagagaggtgatgtgaggtgggtgtatgatggtgaggaggcc aaactgtcaatgtcattttatccacgtggaatatctgtagataaatacaacaacctccttgttactgatgtacacaatga ctgtgtacattacatagacagggagggtaggttgatacagattatacttacatatgaacagactgggttatcatgtcacc gggggatctgtgtagatgacgagacaggtcagaattatgtaacacaaaatcaacaatattaa |
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Protein
| Protein ID | pfu_aug2.0_315.1_17275.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_315.1_17275.t1 MPTLDKMMNETEKNRSEKREIIKEVRDEINAFRIEMKQAVDVSCDNLLETLDQNEVEFDNLIKRLDAQKRKVKELIKGIE EIIQKGDLSMIKHSPPSPGTLIPEVSTPKLSIPVFTPGRDILTIIRDRIGTIEWTDRSSGPTDTSSITKFDPSMINISKV GSFNSKIVATSITTAGNNTAWVMYSDSNTMYLYDSSGKEVRSITVKGSEGINGMVITRSGEMIVTCNDREVRRVSVSGKV STMIDTSPCQPYGLCLTDSEDIVVCMRDQGRRNHLAVYSPDTVKKIREIRGMDGQGKQQITDPYRVVSNGKELCVVNWDP GHVVCVDERGDVRWVYDGMEAKLSRSFDPRGISIDKYNNLLVTDYNNDCVHYIDRDGTLIRIILTEELTRLLILTHDQTG LSGPWGICVDDETESLLQTMSDNSTTTFPTQIVVTCGFCDGTTDVKWFCKSCAASMCNTCKTSHLKITAFKNHVIVPRTN DVMRLYGPSKIAEHCQFHLEKEISTYCNGCQVACCTTCQVQTHQKHDISTIEDAYLSAEKRLNENAKKLEKDVMPTLDKM MNETEMNRSEKREIINEVRDEINAFKIEMKQAVDVSCDNLLETLDQNEVEFDNLIKRLDAQKRKGDLSMIKHSPPSPGTL IPEVSTPKLSIPVFTPGRDILTIIRDRIGTIEWTDRSSGPTDTSSITKCDPSRINISKVSSFSSKICATSITTAGNNTAW VMYNDSDTMYLYDSSGEVVRSITVKGSNGINGLVIRRSGEMTVTSKDRKIRRVSASGMVSNLTDTSPFKPYGVCLTDSED VVVCMRGQYEKNHLAVYSPDTGIKIREIRGVDGQGKQQIADPYRVVSNGKDLCVVNWDPGYVVCVDERGDVRWVYDGEEA KLSMSFYPRGISVDKYNNLLVTDVHNDCVHYIDREGRLIQIILTYEQTGLSCHRGICVDDETGQNYVTQNQQY |
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