Gene
| Gene Model ID | pfu_aug2.0_3171.1_05774 |
|---|---|
| Locus | scaffold3171.1 : 52920 ... 66105 : - |
| To GenomeBrowser | scaffold3171.1:52920..66105 |
| Genes list of scaffold | scaffold3171.1 |
| Synonym | pfu_aug1.0_23964.1_18968 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3171.1_05774.t1 | 2 | 1 | Laminin_G_3 | 13 | 115 | 1.2e-06 | 28.8 | 1.8e-09 | 4.5e-06 | 26.9 |
| pfu_aug2.0_3171.1_05774.t1 | 1 | 1 | Laminin_G_2 | 16 | 106 | 6.5e-07 | 29.4 | 4.8e-10 | 1.2e-06 | 28.5 |
| pfu_aug2.0_3171.1_05774.t1 | 2 | 2 | Laminin_G_3 | 171 | 207 | 1.2e-06 | 28.8 | 0.78 | 1900.0 | -1.1 |
| pfu_aug2.0_3171.1_05774.t1 | 3 | 1 | TSP_1 | 172 | 220 | 7.6e-09 | 35.5 | 3.1e-12 | 7.6e-09 | 35.5 |
| pfu_aug2.0_3171.1_05774.t1 | 5 | 1 | EGF_2 | 193 | 202 | 5.1e-07 | 29.7 | 3.1 | 7600.0 | -2.9 |
| pfu_aug2.0_3171.1_05774.t1 | 5 | 2 | EGF_2 | 220 | 249 | 5.1e-07 | 29.7 | 8.7e-05 | 0.21 | 11.7 |
| pfu_aug2.0_3171.1_05774.t1 | 4 | 1 | hEGF | 237 | 249 | 9.7e-08 | 31.6 | 7.8e-06 | 0.019 | 14.9 |
| pfu_aug2.0_3171.1_05774.t1 | 5 | 3 | EGF_2 | 254 | 281 | 5.1e-07 | 29.7 | 1.1e-05 | 0.026 | 14.6 |
| pfu_aug2.0_3171.1_05774.t1 | 3 | 2 | TSP_1 | 261 | 268 | 7.6e-09 | 35.5 | 6.0 | 15000.0 | -6.2 |
| pfu_aug2.0_3171.1_05774.t1 | 4 | 2 | hEGF | 269 | 281 | 9.7e-08 | 31.6 | 0.00016 | 0.39 | 10.9 |
| pfu_aug2.0_3171.1_05774.t1 | 5 | 4 | EGF_2 | 286 | 313 | 5.1e-07 | 29.7 | 1.3e-05 | 0.032 | 14.3 |
| pfu_aug2.0_3171.1_05774.t1 | 4 | 3 | hEGF | 301 | 308 | 9.7e-08 | 31.6 | 0.0013 | 3.3 | 7.9 |
| pfu_aug2.0_3171.1_05774.t1 | 3 | 3 | TSP_1 | 317 | 345 | 7.6e-09 | 35.5 | 6.0 | 15000.0 | -7.1 |
| pfu_aug2.0_3171.1_05774.t1 | 5 | 5 | EGF_2 | 317 | 343 | 5.1e-07 | 29.7 | 5.6e-06 | 0.014 | 15.5 |
| pfu_aug2.0_3171.1_05774.t1 | 4 | 4 | hEGF | 332 | 343 | 9.7e-08 | 31.6 | 2.9e-05 | 0.073 | 13.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3171.1_05774.t1 | gi|242022729|ref|XP_002431791.1| | Keratin-associated protein 5-9, putative [Pediculus humanus corporis] | 1.0e-29 |
| pfu_aug2.0_3171.1_05774.t1 | gi|195396923|ref|XP_002057078.1| | GJ16546 [Drosophila virilis] | 2.0e-29 |
| pfu_aug2.0_3171.1_05774.t1 | gi|524869114|ref|XP_005091354.1| | PREDICTED: fibropellin-1-like [Aplysia californica] | 3.0e-29 |
| pfu_aug2.0_3171.1_05774.t1 | gi|585672614|ref|XP_006818272.1| | PREDICTED: fibrillin-2-like [Saccoglossus kowalevskii] | 3.0e-29 |
| pfu_aug2.0_3171.1_05774.t1 | gi|676472598|ref|XP_009059539.1| | hypothetical protein LOTGIDRAFT_218536 [Lottia gigantea] | 2.0e-28 |
Transcript
| Transcript ID | pfu_aug2.0_3171.1_05774.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3171.1_05774.t1 atgagtgatataatgggtagacaaagacttgccttaatgtatggcaaaaaattgagatttgagtattatgatcaaaatga cttgccgggtgggaagtcgccattttttgacatagtagtcagcgattctacctggcatcaagtggccattagtgtcagga acagagaaatttccctttattttgattgtgaaaatgctcaaacattagaatttcggagatcgaaaaactcatattttagt acaaatttaatgttatctctgggaccgtactttgcaagatacggagctccgtttcaggggcagattgaacaacttttggt tatcgcagatccaaaggcagcagctgagcagtgtcatatccaaaatactgtaccggagcatgcaataaaagacgatggac gtgttgtaccagattatggacaaaaagtgtcgtctgcaccggaaaagggggatatcaaacttgtcacggactcaaaagtt atccagaaaacgtctccaactccaccattagtacaatggtcgtcatggtcaccttgcagtgccacctgtggaaaagggac acaatcgcgatctctgtactgcaataacaacaaagttgaaaagtgttccgtaaatacagatttgggttcgcagtctaggc tctgttacctaacagagtgtaaagatgacatgtgtaaaaatggtggccagtattccatgttatatcaaaagtgtcgatgt acttcagggtttacggggaagtactgtgagaaataccattgtgatcctatatgtctgaatggaggaaactgtacaggtcc gaacgtgtgtacctgtccaaaaggctactcaggaaactcatgtaatacagctatttgcagacctaagtgtaggaatggtg gactttgtgccaggcctgacgtctgtacctgtcctcagggatatctacctccgtactgtaaacggcattgcaaacagcca tgcctgaacggtggtaaatgcaggaacaacagatgtagatgtcgaaacgggttcaaaggaaaacggtgccaacaaagatc ttgccgttatgaaaaatatgttcagccatacgatcgctcataccggaaactgataagagaagactatgtcacaaaatgtg gaccttggacgtggaaaacgtgtgtgaaaacaagggttcgttatgaattggtgtcaaagactatgtacagaacagcatac agatgtgtctga |
|
Protein
| Protein ID | pfu_aug2.0_3171.1_05774.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3171.1_05774.t1 MSDIMGRQRLALMYGKKLRFEYYDQNDLPGGKSPFFDIVVSDSTWHQVAISVRNREISLYFDCENAQTLEFRRSKNSYFS TNLMLSLGPYFARYGAPFQGQIEQLLVIADPKAAAEQCHIQNTVPEHAIKDDGRVVPDYGQKVSSAPEKGDIKLVTDSKV IQKTSPTPPLVQWSSWSPCSATCGKGTQSRSLYCNNNKVEKCSVNTDLGSQSRLCYLTECKDDMCKNGGQYSMLYQKCRC TSGFTGKYCEKYHCDPICLNGGNCTGPNVCTCPKGYSGNSCNTAICRPKCRNGGLCARPDVCTCPQGYLPPYCKRHCKQP CLNGGKCRNNRCRCRNGFKGKRCQQRSCRYEKYVQPYDRSYRKLIREDYVTKCGPWTWKTCVKTRVRYELVSKTMYRTAY RCV |
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