Gene
| Gene Model ID | pfu_aug2.0_318.1_27211 |
|---|---|
| Locus | scaffold318.1 : 1 ... 6945 : - |
| To GenomeBrowser | scaffold318.1:1..6945 |
| Genes list of scaffold | scaffold318.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_318.1_27211.t1 | 2 | 1 | P4Ha_N | 41 | 158 | 2.7e-21 | 75.8 | 1.2e-24 | 8.9e-21 | 74.1 |
| pfu_aug2.0_318.1_27211.t1 | 2 | 2 | P4Ha_N | 229 | 242 | 2.7e-21 | 75.8 | 0.072 | 540.0 | 0.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_318.1_27211.t1 | gi|198429621|ref|XP_002122601.1| | PREDICTED: prolyl 4-hydroxylase subunit alpha-1-like [Ciona intestinalis] | 2.0e-15 |
| pfu_aug2.0_318.1_27211.t1 | gi|112984520|ref|NP_001037195.1| | prolyl 4-hydroxylase alpha subunit precursor [Bombyx mori] | 7.0e-14 |
Transcript
| Transcript ID | pfu_aug2.0_318.1_27211.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_318.1_27211.t1 atgaaaactctctatgaaatagtttttattgcttttttggtgatatcagtgccgtcagtatgtgcgcatctcttcacttc agtcttcaaaatagaaaattctctaagggaaagtttaccagacattgtaacttctctggatgattatattgaagctgagg aaagacgactaaacgaactggaatgcttcctgaaggatatgactaccctccaaaggagactactggatgtgttggatcag acagaaggggatcctacatcctacttcaagtttaccacattctttgtcaacaactggcaacgactagaggacaaccttaa tgtacagaacacaaatgagttatatgacaaagtaacagagaagaggagtgagcttcctatccaagaagatgtggagggaa tagttgatggtatgacaagatcacaaggaatatttaatctgaaaaccagggatctggctaacggaatcattgctcattgg aaatcgataccacttacagccattgactgttatactattgccaagcacatgtaccacaataacgtgccaaggttatcact acaatggatggacatggcaatggagaagaccgagaatcagacaatgctggaaacagtcagcatggtcaaagacttccaga atataacaacggacttcaatatggaactcttacaatcatccaagaagctaataaagagattgaattcagatgcatgggga accatacattcattggcttttggcacggccgccaaaagagccaaag |
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Protein
| Protein ID | pfu_aug2.0_318.1_27211.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_318.1_27211.t1 MKTLYEIVFIAFLVISVPSVCAHLFTSVFKIENSLRESLPDIVTSLDDYIEAEERRLNELECFLKDMTTLQRRLLDVLDQ TEGDPTSYFKFTTFFVNNWQRLEDNLNVQNTNELYDKVTEKRSELPIQEDVEGIVDGMTRSQGIFNLKTRDLANGIIAHW KSIPLTAIDCYTIAKHMYHNNVPRLSLQWMDMAMEKTENQTMLETVSMVKDFQNITTDFNMELLQSSKKLIKRLNSDAWG TIHSLAFGTAAKRAK |
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