Gene
| Gene Model ID | pfu_aug2.0_318.1_27223 |
|---|---|
| Locus | scaffold318.1 : 146728 ... 148185 : - |
| To GenomeBrowser | scaffold318.1:146728..148185 |
| Genes list of scaffold | scaffold318.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_318.1_27223.t1 | 1 | 1 | SH2 | 98 | 179 | 1.3e-08 | 34.5 | 4.8e-12 | 2.4e-08 | 33.6 |
| pfu_aug2.0_318.1_27223.t1 | 2 | 1 | SOCS_box | 189 | 203 | 5.4e-08 | 32.5 | 0.56 | 2800.0 | -1.8 |
| pfu_aug2.0_318.1_27223.t1 | 2 | 2 | SOCS_box | 217 | 258 | 5.4e-08 | 32.5 | 4.9e-11 | 2.4e-07 | 30.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_318.1_27223.t1 | gi|585650979|ref|XP_002733293.2| | PREDICTED: cytokine-inducible SH2-containing protein-like [Saccoglossus kowalevskii] | 2.99878e-43 |
| pfu_aug2.0_318.1_27223.t1 | gi|391345210|ref|XP_003746883.1| | PREDICTED: suppressor of cytokine signaling 3-like [Metaseiulus occidentalis] | 1.0e-39 |
| pfu_aug2.0_318.1_27223.t1 | gi|676487428|ref|XP_009064290.1| | hypothetical protein LOTGIDRAFT_78096, partial [Lottia gigantea] | 7.0e-38 |
| pfu_aug2.0_318.1_27223.t1 | gi|390341075|ref|XP_003725367.1| | PREDICTED: suppressor of cytokine signaling 2-like [Strongylocentrotus purpuratus] | 4.0e-36 |
| pfu_aug2.0_318.1_27223.t1 | gi|260790485|ref|XP_002590272.1| | hypothetical protein BRAFLDRAFT_216183 [Branchiostoma floridae] | 1.0e-35 |
Transcript
| Transcript ID | pfu_aug2.0_318.1_27223.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_318.1_27223.t1 atgaagtatctgcgaagaagctgttgtggcgatgtgctagcatctagatctatgagtcccaggacattattttgtatgtc tagagaagatcactgtgaatttgagggttgtgaatttggcgaatgtgatcaaaatgtgaccaaggagagattgggtgtta tgcaaacattgagcacccacaatgctaaaataaatgataaagatgaagatggtgacagagaaactctatattattgtgaa aaggatatacgagtacacactgtgtcttgtgatagacttatacagacaggttggtattatcaaagtatgtctagtccaga agccaaaaaacttctcaaacatcatcctgtgggaacatttttgattagagatagttccgatccaaagtttttatattcag tcagtgtaaaaactcctaggggtaccacaagtgttcgaatcatatatcatagaggaactttccaattggactgcgaagat aaaattcgcaataaaatgccaaaatttgactgtgttgttaggttagtggatttttatgtacgacttagtctttctgacag aaatcatatctgcagatggttggagagctcgggtagaaaagatcttccaatttcgctgaagaaaccgcggctggagaaaa cgcttgatctaaaacatttatgcagacttgctatcacgaggtcgtttccattaacaacgaacgtaacgaaagttaaaaag tgtgttgattccttgccagtaccgggaatgattaaagactatctaaaagattatccatatttgaactga |
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Protein
| Protein ID | pfu_aug2.0_318.1_27223.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_318.1_27223.t1 MKYLRRSCCGDVLASRSMSPRTLFCMSREDHCEFEGCEFGECDQNVTKERLGVMQTLSTHNAKINDKDEDGDRETLYYCE KDIRVHTVSCDRLIQTGWYYQSMSSPEAKKLLKHHPVGTFLIRDSSDPKFLYSVSVKTPRGTTSVRIIYHRGTFQLDCED KIRNKMPKFDCVVRLVDFYVRLSLSDRNHICRWLESSGRKDLPISLKKPRLEKTLDLKHLCRLAITRSFPLTTNVTKVKK CVDSLPVPGMIKDYLKDYPYLN |
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