Gene
| Gene Model ID | pfu_aug2.0_32.1_06777 |
|---|---|
| Locus | scaffold32.1 : 63396 ... 78749 : + |
| To GenomeBrowser | scaffold32.1:63396..78749 |
| Genes list of scaffold | scaffold32.1 |
| Synonym | pfu_aug1.0_8329.1_38733 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_32.1_06777.t1 | 2 | 1 | TSP_1 | 49 | 71 | 6.8e-14 | 51.7 | 4.7e-08 | 0.00035 | 20.6 |
| pfu_aug2.0_32.1_06777.t1 | 2 | 2 | TSP_1 | 101 | 151 | 6.8e-14 | 51.7 | 7.9e-13 | 5.8e-09 | 35.9 |
| pfu_aug2.0_32.1_06777.t1 | 2 | 1 | Ldl_recept_a | 143 | 151 | 8.8e-07 | 28.7 | 0.63 | 4700.0 | -2.4 |
| pfu_aug2.0_32.1_06777.t1 | 2 | 2 | Ldl_recept_a | 162 | 198 | 8.8e-07 | 28.7 | 1.2e-10 | 8.8e-07 | 28.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_32.1_06777.t1 | gi|676462897|ref|XP_009056419.1| | hypothetical protein LOTGIDRAFT_162203 [Lottia gigantea] | 2.0e-29 |
| pfu_aug2.0_32.1_06777.t1 | gi|260793070|ref|XP_002591536.1| | hypothetical protein BRAFLDRAFT_92765 [Branchiostoma floridae] | 2.0e-18 |
| pfu_aug2.0_32.1_06777.t1 | gi|260803804|ref|XP_002596779.1| | hypothetical protein BRAFLDRAFT_120487 [Branchiostoma floridae] | 2.0e-18 |
Transcript
| Transcript ID | pfu_aug2.0_32.1_06777.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_32.1_06777.t1 atggtatcacccgaggattccgaccagcatccaaagaggacagctggtcgggacccagtcttctctaaagaggtatggac agggcccgtcatggggttccgtcgtcacactagttcctgtgccagtttggagccccactggggatcgtggagtgagtggg gtctctgttcagcctcgtgtggatccggcactgccagcaggaagacggcttgggtcgttaacggatactctacagactac atattctacgacactgtggaatgttcatcatccgttgtttgtccaatcgatggtcattggagtatgtggagtgagtggac agtgtgtccagtgatgtgtgggacaggatatcatacccgagagagatggtgtgattccccggccccaaaacacggtggta gaagctgccttggtcagagacaagacaagaaaaaatgcaacgaaatcaaatgtccagagataccaaagaacttcaaactg tcttcatgtaatacatcacattttatgtgtcacagtcgtaaatattgtgtaatacatcgagttcgctgtgacaggaaact acactgcgatgacggaagtgacgaaaaagattgtcatgattctcatggaaatttcaaaggaggttccgttgaattacagt tccttagattttgcctcaacctgaaaccttaa |
|
Protein
| Protein ID | pfu_aug2.0_32.1_06777.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_32.1_06777.t1 MVSPEDSDQHPKRTAGRDPVFSKEVWTGPVMGFRRHTSSCASLEPHWGSWSEWGLCSASCGSGTASRKTAWVVNGYSTDY IFYDTVECSSSVVCPIDGHWSMWSEWTVCPVMCGTGYHTRERWCDSPAPKHGGRSCLGQRQDKKKCNEIKCPEIPKNFKL SSCNTSHFMCHSRKYCVIHRVRCDRKLHCDDGSDEKDCHDSHGNFKGGSVELQFLRFCLNLKP |
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