Gene
| Gene Model ID | pfu_aug2.0_32.1_06778 |
|---|---|
| Locus | scaffold32.1 : 79807 ... 88685 : - |
| To GenomeBrowser | scaffold32.1:79807..88685 |
| Genes list of scaffold | scaffold32.1 |
| Synonym | pfu_aug1.0_8329.1_38732 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| glycoprotein-n-acetylgalactosamine 3-beta-galactosyltransferase 1 | GO:0003824 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_32.1_06778.t1 | 1 | 1 | Fringe | 80 | 251 | 4.4e-12 | 45.7 | 3.6e-15 | 2.6e-11 | 43.2 |
| pfu_aug2.0_32.1_06778.t1 | 2 | 1 | Galactosyl_T | 127 | 192 | 4.9e-06 | 26.2 | 4.2e-08 | 0.00031 | 20.3 |
| pfu_aug2.0_32.1_06778.t1 | 2 | 2 | Galactosyl_T | 203 | 251 | 4.9e-06 | 26.2 | 0.0058 | 43.0 | 3.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_32.1_06778.t1 | gi|676496854|ref|XP_009067351.1| | hypothetical protein LOTGIDRAFT_170451 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_32.1_06778.t1 | gi|260836299|ref|XP_002613143.1| | hypothetical protein BRAFLDRAFT_57975 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_32.1_06778.t1 | gi|637356928|ref|XP_008119416.1| | PREDICTED: glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-A-like isoform X2 [Anolis carolinensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_32.1_06778.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_32.1_06778.t1 atggatcagatgatttcaggtgcagacatgcgtgtacgtcgccggctcgtgtacagggtgactttagcggcggcattcct aagttttgtttatttaatgacagttcggataaagaatgacaactcctatgcaagccttgaagatatcgagaagtcaagag cactgaatttgcgttatgtcgatggatttatgaaaagatttgctaattcaaaacaaagtacaaagaagaatgcaaaatac agtagaatcctatgttttgttatgacgacaccctcaaacattgccactaaggctatggcggtgaataacacgtggggatc aagatgtgataaattactatttgtgaatgcggaagtcataacgtcactgcctactatggtcatagaagtggaggaaggta gagaccacttaacaaagaaaacatacaaatctcttcagtatctttacaaacactacgtcgatagttacgattggttctta aaagcagacgacgacgcctacctcattatggaaaatctgcgtcatcttttggagagctacaattcccagaatgccgtgta tctaggtcatcacttccgtataggaacacgtcaaggatatatgtcaggtggaggcgggtttttattgagcgcgggagctt tgaaagctatcaacgaaaaaggttatggggtagagcccatgtgtcaaatggatggtaaagacgaggatcttgatatagga atatgccttgatcatattggtgtgaaaacttattcgtccatagacaaatatggccgacaaagcttccatccttttggtat aatcaaatcactgacgtccagtattaccggcggtgagagttattactttgataggccaattaaagatggacccgattgtt gtagtcaactatcagtgtcttttcactacataaatccagtgcagatgtacttattagaattcatgctttataaatccgtt ctccatgggaggcactatccaatcaaatccaaggataactttttcaaaccggaagtcgctactattccaaataaggcagc caatgaaatcattcttccaccaaaatatttctggcatttcctcttcggcaggaggaagtatgttaacagtggtaacagga atggtagtgacctttatcttatagtatttgtgatattttatcagacactggttattgctaggtga |
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Protein
| Protein ID | pfu_aug2.0_32.1_06778.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_32.1_06778.t1 MDQMISGADMRVRRRLVYRVTLAAAFLSFVYLMTVRIKNDNSYASLEDIEKSRALNLRYVDGFMKRFANSKQSTKKNAKY SRILCFVMTTPSNIATKAMAVNNTWGSRCDKLLFVNAEVITSLPTMVIEVEEGRDHLTKKTYKSLQYLYKHYVDSYDWFL KADDDAYLIMENLRHLLESYNSQNAVYLGHHFRIGTRQGYMSGGGGFLLSAGALKAINEKGYGVEPMCQMDGKDEDLDIG ICLDHIGVKTYSSIDKYGRQSFHPFGIIKSLTSSITGGESYYFDRPIKDGPDCCSQLSVSFHYINPVQMYLLEFMLYKSV LHGRHYPIKSKDNFFKPEVATIPNKAANEIILPPKYFWHFLFGRRKYVNSGNRNGSDLYLIVFVIFYQTLVIAR |
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