Gene
| Gene Model ID | pfu_aug2.0_32.1_06784 |
|---|---|
| Locus | scaffold32.1 : 209452 ... 215020 : + |
| To GenomeBrowser | scaffold32.1:209452..215020 |
| Genes list of scaffold | scaffold32.1 |
| Synonym | pfu_aug1.0_33597.1_33892 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_32.1_06784.t1 | 6 | 1 | LRR_1 | 42 | 57 | 5.6e-07 | 28.7 | 3.1 | 4500.0 | -1.5 |
| pfu_aug2.0_32.1_06784.t1 | 3 | 1 | LRR_8 | 63 | 120 | 1.5e-17 | 63.0 | 3.1e-17 | 4.6e-14 | 51.9 |
| pfu_aug2.0_32.1_06784.t1 | 4 | 1 | LRR_4 | 63 | 99 | 1.2e-09 | 37.6 | 2.6e-08 | 3.9e-05 | 23.1 |
| pfu_aug2.0_32.1_06784.t1 | 6 | 2 | LRR_1 | 63 | 82 | 5.6e-07 | 28.7 | 0.00029 | 0.44 | 10.7 |
| pfu_aug2.0_32.1_06784.t1 | 4 | 2 | LRR_4 | 84 | 120 | 1.2e-09 | 37.6 | 1.8e-07 | 0.00027 | 20.5 |
| pfu_aug2.0_32.1_06784.t1 | 6 | 3 | LRR_1 | 85 | 107 | 5.6e-07 | 28.7 | 6.4e-06 | 0.0094 | 15.8 |
| pfu_aug2.0_32.1_06784.t1 | 4 | 3 | LRR_4 | 109 | 154 | 1.2e-09 | 37.6 | 7.1e-06 | 0.011 | 15.3 |
| pfu_aug2.0_32.1_06784.t1 | 6 | 4 | LRR_1 | 109 | 121 | 5.6e-07 | 28.7 | 0.12 | 180.0 | 2.7 |
| pfu_aug2.0_32.1_06784.t1 | 3 | 2 | LRR_8 | 128 | 173 | 1.5e-17 | 63.0 | 8.0e-05 | 0.12 | 12.1 |
| pfu_aug2.0_32.1_06784.t1 | 4 | 4 | LRR_4 | 137 | 173 | 1.2e-09 | 37.6 | 0.00053 | 0.79 | 9.4 |
| pfu_aug2.0_32.1_06784.t1 | 6 | 5 | LRR_1 | 137 | 152 | 5.6e-07 | 28.7 | 0.017 | 25.0 | 5.4 |
| pfu_aug2.0_32.1_06784.t1 | 3 | 3 | LRR_8 | 160 | 173 | 1.5e-17 | 63.0 | 0.1 | 160.0 | 2.1 |
| pfu_aug2.0_32.1_06784.t1 | 1 | 1 | TIR | 207 | 341 | 1.3e-23 | 83.0 | 1.3e-26 | 1.9e-23 | 82.4 |
| pfu_aug2.0_32.1_06784.t1 | 1 | 1 | TIR_2 | 208 | 310 | 1.3e-15 | 57.3 | 1.4e-18 | 2.1e-15 | 56.6 |
| pfu_aug2.0_32.1_06784.t1 | 6 | 6 | LRR_1 | 259 | 259 | 5.6e-07 | 28.7 | 6.7 | 9900.0 | -2.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_32.1_06784.t1 | gi|676474120|ref|XP_009060039.1| | hypothetical protein LOTGIDRAFT_106865 [Lottia gigantea] | 1.0e-34 |
| pfu_aug2.0_32.1_06784.t1 | gi|676473780|ref|XP_009059929.1| | hypothetical protein LOTGIDRAFT_58571, partial [Lottia gigantea] | 3.0e-34 |
| pfu_aug2.0_32.1_06784.t1 | gi|617445251|ref|XP_007566608.1| | PREDICTED: toll-like receptor 13 [Poecilia formosa] | 4.0e-33 |
| pfu_aug2.0_32.1_06784.t1 | gi|551508064|ref|XP_005805561.1| | PREDICTED: toll-like receptor 13-like [Xiphophorus maculatus] | 1.0e-32 |
| pfu_aug2.0_32.1_06784.t1 | gi|542250105|ref|XP_005461289.1| | PREDICTED: toll-like receptor 13-like [Oreochromis niloticus] | 3.0e-32 |
Transcript
| Transcript ID | pfu_aug2.0_32.1_06784.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_32.1_06784.t1 atggctgcgtctaaacacggtgcagctgctgttctggttatcctgttcttggccatcatgcgagcacatggtaatgattc acatgcaataaattgtatgaagaaatggaagaaggatggtatatacatcaactgttcagctcgtaatttaacagtggttc ctgattttacccaccgatctttcataactcaactggatctgtcctcgaacaatatttcagttctttcgaacactcctttc aaagatatgaaaaatatgacacaccttgacctttctaaaaataggttagtctgtctaccagtggatgtgtttaaagggtt gcaatcactgaagtacctaagtttgtatgctaataacatccctctcaacaatcattcgtacccggacggcttattccatg acctgaaacgtctgaagtttctggatttaagaagaaacgatccttgtacggacctcaagaatggagcttacccgtcaacg gctttggtggatttaaaatcattagaagaattgcatatcgatgcactttaccatacgagttttgactatttgttccggaa aatgaaaagcctatcaaatggttacgttaagttggaacagcataactttgattacgacgcttttatttcgtacgcagcgg atgatcgatggtttgttgttgatggtataatgccaatattggaaaaagaaaaaggacttcgctttattcttcacgacaga gacttccttcctggaaatgacataagcgacaatataatggcggccattagaaacagtcgaaagaccgtttgcgtcctttc aaaaaactttttcaaatcatactggtgtactttcgaattcaatatggcatgtatggagaatttcaatgcgaggaaaggtg agaagattatatttttgatcttgctggaagatatcagagacgaagatttacagcccaaaatgctggagtacatggaagat aaatcatacatcaaagttccaactgacggcgataataatgctgtattttggaataatatctataaagctctgatagatta a |
|
Protein
| Protein ID | pfu_aug2.0_32.1_06784.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_32.1_06784.t1 MAASKHGAAAVLVILFLAIMRAHGNDSHAINCMKKWKKDGIYINCSARNLTVVPDFTHRSFITQLDLSSNNISVLSNTPF KDMKNMTHLDLSKNRLVCLPVDVFKGLQSLKYLSLYANNIPLNNHSYPDGLFHDLKRLKFLDLRRNDPCTDLKNGAYPST ALVDLKSLEELHIDALYHTSFDYLFRKMKSLSNGYVKLEQHNFDYDAFISYAADDRWFVVDGIMPILEKEKGLRFILHDR DFLPGNDISDNIMAAIRNSRKTVCVLSKNFFKSYWCTFEFNMACMENFNARKGEKIIFLILLEDIRDEDLQPKMLEYMED KSYIKVPTDGDNNAVFWNNIYKALID |
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