Gene
| Gene Model ID | pfu_aug2.0_320.1_00604 |
|---|---|
| Locus | scaffold320.1 : 339542 ... 361235 : - |
| To GenomeBrowser | scaffold320.1:339542..361235 |
| Genes list of scaffold | scaffold320.1 |
| Synonym | pfu_aug1.0_2053.1_08214 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_320.1_00604.t1 | 4 | 1 | Cadherin | 21 | 38 | 2.0e-19 | 69.6 | 0.1 | 1500.0 | -0.6 |
| pfu_aug2.0_320.1_00604.t1 | 4 | 2 | Cadherin | 140 | 187 | 2.0e-19 | 69.6 | 0.00024 | 3.6 | 7.8 |
| pfu_aug2.0_320.1_00604.t1 | 4 | 3 | Cadherin | 201 | 297 | 2.0e-19 | 69.6 | 3.1e-16 | 4.6e-12 | 46.0 |
| pfu_aug2.0_320.1_00604.t1 | 4 | 4 | Cadherin | 312 | 336 | 2.0e-19 | 69.6 | 8.2e-07 | 0.012 | 15.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_320.1_00604.t1 | gi|677967466|ref|XP_009069747.1| | PREDICTED: protocadherin Fat 4-like [Acanthisitta chloris] | 1.0e-28 |
| pfu_aug2.0_320.1_00604.t1 | gi|688585654|ref|XP_009289437.1| | PREDICTED: protocadherin Fat 1 isoform X1 [Danio rerio] | 3.0e-25 |
| pfu_aug2.0_320.1_00604.t1 | gi|688585657|ref|XP_009289438.1| | PREDICTED: protocadherin Fat 1 isoform X2 [Danio rerio] | 3.0e-25 |
| pfu_aug2.0_320.1_00604.t1 | gi|688585662|ref|XP_009289440.1| | PREDICTED: protocadherin Fat 1 isoform X3 [Danio rerio] | 3.0e-25 |
| pfu_aug2.0_320.1_00604.t1 | gi|156404209|ref|XP_001640300.1| | predicted protein [Nematostella vectensis] | 4.0e-25 |
Transcript
| Transcript ID | pfu_aug2.0_320.1_00604.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_320.1_00604.t1 atgattcctttatggagtttcacactgtaaaggcaataagtttaacagcaaattcctcgtattttgacatcagaaagaac ggcaataacaactggtttgtaatcgtaaagaaagaatttgacatcgaggatccaacatttatatctcagaatttcccaac ggaaaacttatatatggcatgcactccattgaatggtcttccattaaactatggaataagttgccatattgaaaacgtta tagaggagggaccaaagtttgtaaaaagcagatatgacttaaatgtgtcagaggacactacaataggaacatctctcaag actataactccttcattttcggaacccgaatctgttcaactcgactttaatctgaagggaattggaggtaaagatagttt ggttttggacttgacgccgatttcacccagaagtactgacttgtttttattgagaacggtagattacgataccggtgtat attcatacaacatgacccttacatcaacggtccgagatatgtccaatctcacagcaacaactgaaattgtcgttcatgtc accgatgcagacgatcaaaatcctacattcacaaggaatgtgtacaattgttttgtaaaagaaaatgtagcagttaatac atcagttatttgtgatcatacccctttcgcttatgaccaagacaggggactaaatcagaaagtcctttatcaaatcgttg gaattgtgcatcacgtcaacatgccgtacactatcaacagtgattctggaaatataacagtaaatggtaccctggatcgc gagaagagagattcttacgcttttacaattatggcaaaacaaaccgacaaacctttactgagacgtgctacatcattggt ttatgtacaaatagttgatgtcaacgataacagccctgttatgtctgaaccaacatacaatgtatccataccagagaatc ttcctgatggaacctttgtattgaaagttggagccacagatctggatagagtacgtacagaattgccttaa |
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Protein
| Protein ID | pfu_aug2.0_320.1_00604.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_320.1_00604.t1 DSFMEFHTVKAISLTANSSYFDIRKNGNNNWFVIVKKEFDIEDPTFISQNFPTENLYMACTPLNGLPLNYGISCHIENVI EEGPKFVKSRYDLNVSEDTTIGTSLKTITPSFSEPESVQLDFNLKGIGGKDSLVLDLTPISPRSTDLFLLRTVDYDTGVY SYNMTLTSTVRDMSNLTATTEIVVHVTDADDQNPTFTRNVYNCFVKENVAVNTSVICDHTPFAYDQDRGLNQKVLYQIVG IVHHVNMPYTINSDSGNITVNGTLDREKRDSYAFTIMAKQTDKPLLRRATSLVYVQIVDVNDNSPVMSEPTYNVSIPENL PDGTFVLKVGATDLDRVRTELP |
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