Gene
| Gene Model ID | pfu_aug2.0_321.1_03991 |
|---|---|
| Locus | scaffold321.1 : 24256 ... 28210 : + |
| To GenomeBrowser | scaffold321.1:24256..28210 |
| Genes list of scaffold | scaffold321.1 |
| Synonym | pfu_aug1.0_17891.1_25673 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_321.1_03991.t1 | 2 | 1 | zf-B_box | 17 | 58 | 3.0e-12 | 46.2 | 8.2e-06 | 0.024 | 14.5 |
| pfu_aug2.0_321.1_03991.t1 | 2 | 2 | zf-B_box | 71 | 107 | 3.0e-12 | 46.2 | 6.9e-13 | 2.1e-09 | 37.1 |
| pfu_aug2.0_321.1_03991.t1 | 3 | 1 | NHL | 167 | 183 | 3.0e-08 | 33.2 | 0.012 | 37.0 | 4.5 |
| pfu_aug2.0_321.1_03991.t1 | 3 | 2 | NHL | 204 | 226 | 3.0e-08 | 33.2 | 1.3e-05 | 0.038 | 13.9 |
| pfu_aug2.0_321.1_03991.t1 | 3 | 3 | NHL | 247 | 261 | 3.0e-08 | 33.2 | 0.00016 | 0.48 | 10.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_321.1_03991.t1 | gi|291243265|ref|XP_002741523.1| | PREDICTED: E3 ubiquitin-protein ligase TRIM33-like [Saccoglossus kowalevskii] | 7.0e-14 |
| pfu_aug2.0_321.1_03991.t1 | gi|260824834|ref|XP_002607372.1| | hypothetical protein BRAFLDRAFT_69778 [Branchiostoma floridae] | 1.0e-12 |
| pfu_aug2.0_321.1_03991.t1 | gi|755888122|ref|XP_011294441.1| | PREDICTED: E3 ubiquitin-protein ligase TRIM33 isoform X2 [Musca domestica] | 1.0e-11 |
| pfu_aug2.0_321.1_03991.t1 | gi|557777145|ref|XP_005188208.1| | PREDICTED: E3 ubiquitin-protein ligase TRIM33 isoform X1 [Musca domestica] | 1.0e-11 |
Transcript
| Transcript ID | pfu_aug2.0_321.1_03991.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_321.1_03991.t1 atggcatcgtcgaagtctgataattttgaacaagcccaggccacgataaaatgtgatctttgtggtggagtggatggtgt caagcattactgcctcatttgtgaggaaacaatgtgcccttcgtgtaaagacatccataacaaggcccgcgccaccaggg aacaccatgtagtgcttagagaggagagagacaccgatgatcagacctccacattctgtaagaaacatccagatcagaag accagtctatactgtgacacttgcaacgctcctgtgtgttcgaaatgtgtagctgaaacacattatggccacaagttctc agatttctcaatagtcctagaaaacttcaaacgagaaataaaagacaaagcaggaaatattggtaatgtcgacagcacat ttaaaggaagtgtggcatcgtgctatggtgaagaatgccatcaaagagacattggatcagaggacctatatgagtggcct atccaggctgcagaattgcaggatggtggattctgtatcagcgactatgaaaaacaacgactgatggttctgaacgcaga tggtatcgtcagacaaaccataaagaatccactaggaagaagggagttctggccaaggggaatttgtatcgacaaggctg gtagtatccttgctgctgatcaatataatgattgtgtgtatgtgatagggaaggacatgtcagtcagagagctggtaggg aaagcagagggaatcaaagatccgaggtgtctttgtgtagatgacaacaataatctctggatatcacaattcaatggtga agtcaaagtggtcaaatacttctaa |
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Protein
| Protein ID | pfu_aug2.0_321.1_03991.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_321.1_03991.t1 MASSKSDNFEQAQATIKCDLCGGVDGVKHYCLICEETMCPSCKDIHNKARATREHHVVLREERDTDDQTSTFCKKHPDQK TSLYCDTCNAPVCSKCVAETHYGHKFSDFSIVLENFKREIKDKAGNIGNVDSTFKGSVASCYGEECHQRDIGSEDLYEWP IQAAELQDGGFCISDYEKQRLMVLNADGIVRQTIKNPLGRREFWPRGICIDKAGSILAADQYNDCVYVIGKDMSVRELVG KAEGIKDPRCLCVDDNNNLWISQFNGEVKVVKYF |
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