Gene
| Gene Model ID | pfu_aug2.0_3227.1_25685 |
|---|---|
| Locus | scaffold3227.1 : 1 ... 3791 : + |
| To GenomeBrowser | scaffold3227.1:1..3791 |
| Genes list of scaffold | scaffold3227.1 |
| Synonym | pfu_aug1.0_2678.1_66413 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| interferon alpha-inducible protein 27-like protein 2a | GO:0000122 GO:0001102 GO:0005521 GO:0005637 GO:0005739 GO:0006919 GO:0032355 GO:0034097 GO:0046825 GO:0060135 GO:0097190 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3227.1_25685.t1 | 1 | 1 | Ifi-6-16 | 60 | 133 | 2.4e-23 | 81.7 | 2.6e-27 | 3.9e-23 | 81.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3227.1_25685.t1 | gi|42821118|ref|NP_981955.1| | interferon alpha-inducible protein 27 [Rattus norvegicus] | 5.0e-16 |
| pfu_aug2.0_3227.1_25685.t1 | gi|742102493|ref|XP_010834530.1| | PREDICTED: interferon alpha-inducible protein 27-like protein 2B isoform X2 [Bison bison bison] | 2.0e-15 |
Transcript
| Transcript ID | pfu_aug2.0_3227.1_25685.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3227.1_25685.t1 tgtctggattatacagcgactgtatcatcaaggacaatggcagacgtctgtcaacagattgttgtatctttgctagtctc tttactccttacagcccccataaatggaaaagatgattctaagagttcatattacgaggatgcctggtgttatgcaaaaa acatcggtggcggcgtagtaattggaggcgcagccgtagcagctgcacccatggtgttgtcagccgctggatttactgcc ggtggtattgccgctggctctctagctgcgaaagcgatgtccgtggcggcaacagcaaatggtggtggtgttgtagccgg gggtgtggtggcagcccttcaatctgcgggcgccgctggtctagggattggggcaaaacttggaataggaactacggtcg gaggagtatactcgtactttacaggagggtgttacaaaggaaattgtgaagaggaagcggaagaaacgtag |
|
Protein
| Protein ID | pfu_aug2.0_3227.1_25685.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3227.1_25685.t1 CLDYTATVSSRTMADVCQQIVVSLLVSLLLTAPINGKDDSKSSYYEDAWCYAKNIGGGVVIGGAAVAAAPMVLSAAGFTA GGIAAGSLAAKAMSVAATANGGGVVAGGVVAALQSAGAAGLGIGAKLGIGTTVGGVYSYFTGGCYKGNCEEEAEET |
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