Gene
| Gene Model ID | pfu_aug2.0_3227.1_25686 |
|---|---|
| Locus | scaffold3227.1 : 13666 ... 31518 : + |
| To GenomeBrowser | scaffold3227.1:13666..31518 |
| Genes list of scaffold | scaffold3227.1 |
| Synonym | pfu_aug1.0_2678.1_66412 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| interferon alpha-inducible protein 27-like protein 2-like isoform x1 | GO:0000122 GO:0001102 GO:0005521 GO:0005637 GO:0005739 GO:0006919 GO:0007568 GO:0009615 GO:0032355 GO:0034097 GO:0046825 GO:0060135 GO:0097190 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3227.1_25686.t1 | 1 | 1 | Ifi-6-16 | 23 | 97 | 5.1e-23 | 80.6 | 9.0e-27 | 6.7e-23 | 80.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3227.1_25686.t1 | gi|512949326|ref|XP_004837111.1| | PREDICTED: interferon alpha-inducible protein 27-like protein 2B isoform X1 [Heterocephalus glaber] | 3.0e-19 |
| pfu_aug2.0_3227.1_25686.t1 | gi|731277218|ref|XP_010607549.1| | PREDICTED: interferon alpha-inducible protein 27-like protein 2A [Fukomys damarensis] | 5.0e-19 |
| pfu_aug2.0_3227.1_25686.t1 | gi|558175367|ref|XP_006126025.1| | PREDICTED: interferon alpha-inducible protein 27-like protein 2-like [Pelodiscus sinensis] | 6.0e-17 |
| pfu_aug2.0_3227.1_25686.t1 | gi|348553754|ref|XP_003462691.1| | PREDICTED: interferon alpha-inducible protein 27-like protein 2B-like [Cavia porcellus] | 2.0e-16 |
Transcript
| Transcript ID | pfu_aug2.0_3227.1_25686.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3227.1_25686.t1 atggccgaaacgcaaaataataccaacgctcggcgatatgcaaaatacatgtatattggtgttggtgtagtagctggagg ggttgcaatcgtcgccgccccccaggtattgtcagccgtgggatttactaaatttggtatcaccgctagctcgttaggtg ccaaagctatgtcagcggctgcaatagcaaatggcggcggtgttggtgcaggtggtgcggtgccaatccttcagtctgcg ggagccgctggttttagttttgcaacgaaactaacaattgggactgtggtaggaggagcaagttcgtattttacaaaaag attatgcgaaggaaacagcgaaatgaaggcgaaagaaaaatag |
|
Protein
| Protein ID | pfu_aug2.0_3227.1_25686.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3227.1_25686.t1 MAETQNNTNARRYAKYMYIGVGVVAGGVAIVAAPQVLSAVGFTKFGITASSLGAKAMSAAAIANGGGVGAGGAVPILQSA GAAGFSFATKLTIGTVVGGASSYFTKRLCEGNSEMKAKEK |
|