Gene
| Gene Model ID | pfu_aug2.0_3232.1_09083 |
|---|---|
| Locus | scaffold3232.1 : 1880 ... 3515 : - |
| To GenomeBrowser | scaffold3232.1:1880..3515 |
| Genes list of scaffold | scaffold3232.1 |
| Synonym | pfu_aug1.0_5941.1_02106 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3232.1_09083.t1 | 3 | 1 | zf-B_box | 12 | 19 | 2.3e-10 | 40.1 | 0.46 | 1700.0 | -1.0 |
| pfu_aug2.0_3232.1_09083.t1 | 3 | 2 | zf-B_box | 24 | 55 | 2.3e-10 | 40.1 | 0.0016 | 5.8 | 6.8 |
| pfu_aug2.0_3232.1_09083.t1 | 3 | 3 | zf-B_box | 75 | 115 | 2.3e-10 | 40.1 | 6.2e-13 | 2.3e-09 | 36.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3232.1_09083.t1 | gi|557260451|ref|XP_006015869.1| | PREDICTED: E3 ubiquitin-protein ligase TRIM56-like [Alligator sinensis] | 2.0e-28 |
| pfu_aug2.0_3232.1_09083.t1 | gi|395842830|ref|XP_003794211.1| | 2.0e-28 | |
| pfu_aug2.0_3232.1_09083.t1 | gi|634823085|ref|XP_007938154.1| | PREDICTED: E3 ubiquitin-protein ligase TRIM56 [Orycteropus afer afer] | 3.0e-27 |
| pfu_aug2.0_3232.1_09083.t1 | gi|560958007|ref|XP_006201472.1| | PREDICTED: E3 ubiquitin-protein ligase TRIM56 [Vicugna pacos] | 4.0e-27 |
Transcript
| Transcript ID | pfu_aug2.0_3232.1_09083.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3232.1_09083.t1 atgttcaatgaatcaacttcaacaaagttcggaaaatattattgtttatattgcgtattactgataaagaagaatccagc tcatgggaagtgtctcacctgtggcgatttcctttgttcagagtgtttcgacagacacacattcacaacggaaacattca accatgagactgcaacaacacaagatcttcatagtggtaaatataatgaaaaattaagatcgagccaagaaattccatgt caggaacataaaaatgaattccttcattatttctgtgacacatgcgatgttcccgtatgccgcgattgtgagattctgaa tcaccgacaagaccattccatagttcagccatgccaggcattggagaaaaaacgacaagagttaggcaaactgatggaag gattggatcataaaatgagtaagatcaaagcaaacgttgaactattgaatgaagaggaatgcaagctaatggaaacacaa agacaactctcggacactatgcaagaaactatcaatatgatagtgaaaaaacttcagtcggagaaaagagggaaacaaaa acttatgcaagcctacgtagattctagaaaagaagaacttgcaaagagaaaagaagaacaagacgtgaaaatacagcttc tggggaaatctatggaattttgccgaagagtcattgacaatggtatagagggcgagatcgtattcctccaggacgttatg agggaaagactatcacgcttagacgcgtgtgtccatgatatcgatatatatgagccattagcacctccatctttgtcaat ctctgaaattggagagaaaatttcacctttgggtatatttagaattgaattttcaacgaaaaaatcagctatggtttcat gtttacgcgatgaaaactcgagagttcgatccgaagatgaaaggagcttgctctgtccaaatatctctaaaaaagacgag atttccattcaaaacttcgatagtacacatattggtaattcgtcagattgtgtatctattacaaaagaggataggaaaac tgcaaataaagaccagtgctcccacttaaaaagtgaaggagcaccaaatacgccctaccttcgtctggagtgtttcacag actgtaaactttttggagatgttcgtaaaccgaaattatcatctgtagcctggcttaatgaacaaacattcattgcagcg gatgaatctaatgaaaaattaaaacaatactgcattacaggaaaacttttgaatttgattgtgatgggaaacatattaac agtcacatatgccaatgagattatttattgtggactcaaacgtgatgaaatgaaacttctcaatgcaaatttttag |
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Protein
| Protein ID | pfu_aug2.0_3232.1_09083.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3232.1_09083.t1 MFNESTSTKFGKYYCLYCVLLIKKNPAHGKCLTCGDFLCSECFDRHTFTTETFNHETATTQDLHSGKYNEKLRSSQEIPC QEHKNEFLHYFCDTCDVPVCRDCEILNHRQDHSIVQPCQALEKKRQELGKLMEGLDHKMSKIKANVELLNEEECKLMETQ RQLSDTMQETINMIVKKLQSEKRGKQKLMQAYVDSRKEELAKRKEEQDVKIQLLGKSMEFCRRVIDNGIEGEIVFLQDVM RERLSRLDACVHDIDIYEPLAPPSLSISEIGEKISPLGIFRIEFSTKKSAMVSCLRDENSRVRSEDERSLLCPNISKKDE ISIQNFDSTHIGNSSDCVSITKEDRKTANKDQCSHLKSEGAPNTPYLRLECFTDCKLFGDVRKPKLSSVAWLNEQTFIAA DESNEKLKQYCITGKLLNLIVMGNILTVTYANEIIYCGLKRDEMKLLNANF |
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