Gene
| Gene Model ID | pfu_aug2.0_3232.1_09084 |
|---|---|
| Locus | scaffold3232.1 : 5021 ... 8965 : - |
| To GenomeBrowser | scaffold3232.1:5021..8965 |
| Genes list of scaffold | scaffold3232.1 |
| Synonym | pfu_aug1.0_5941.1_02108 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3232.1_09084.t1 | 1 | 1 | zf-RING_2 | 15 | 59 | 1.6e-08 | 34.1 | 1.7e-11 | 1.6e-08 | 34.1 |
| pfu_aug2.0_3232.1_09084.t1 | 2 | 1 | zf-C3HC4_3 | 15 | 60 | 1.5e-06 | 27.7 | 1.5e-09 | 1.5e-06 | 27.7 |
| pfu_aug2.0_3232.1_09084.t1 | 3 | 1 | zf-C3HC4 | 16 | 58 | 1.4e-09 | 37.4 | 1.4e-12 | 1.4e-09 | 37.4 |
| pfu_aug2.0_3232.1_09084.t1 | 3 | 1 | zf-C3HC4_2 | 16 | 58 | 2.4e-09 | 37.0 | 2.4e-12 | 2.4e-09 | 37.0 |
| pfu_aug2.0_3232.1_09084.t1 | 3 | 1 | zf-RING_UBOX | 16 | 56 | 1.2e-07 | 31.2 | 1.2e-10 | 1.2e-07 | 31.2 |
| pfu_aug2.0_3232.1_09084.t1 | 2 | 1 | zf-C3HC4_4 | 16 | 58 | 3.6e-07 | 29.9 | 3.7e-10 | 3.6e-07 | 29.9 |
| pfu_aug2.0_3232.1_09084.t1 | 4 | 1 | zf-RING_5 | 16 | 59 | 6.5e-06 | 25.7 | 6.5e-09 | 6.5e-06 | 25.7 |
| pfu_aug2.0_3232.1_09084.t1 | 4 | 1 | zf-B_box | 30 | 43 | 4.3e-11 | 42.5 | 0.12 | 120.0 | 2.6 |
| pfu_aug2.0_3232.1_09084.t1 | 4 | 2 | zf-B_box | 54 | 59 | 4.3e-11 | 42.5 | 3.6 | 3600.0 | -2.1 |
| pfu_aug2.0_3232.1_09084.t1 | 3 | 2 | zf-RING_UBOX | 55 | 63 | 1.2e-07 | 31.2 | 0.13 | 130.0 | 2.4 |
| pfu_aug2.0_3232.1_09084.t1 | 2 | 2 | zf-C3HC4_3 | 94 | 128 | 1.5e-06 | 27.7 | 0.063 | 62.0 | 3.3 |
| pfu_aug2.0_3232.1_09084.t1 | 4 | 3 | zf-B_box | 95 | 139 | 4.3e-11 | 42.5 | 2.0e-05 | 0.02 | 14.7 |
| pfu_aug2.0_3232.1_09084.t1 | 3 | 2 | zf-C3HC4 | 97 | 130 | 1.4e-09 | 37.4 | 0.89 | 880.0 | -0.4 |
| pfu_aug2.0_3232.1_09084.t1 | 4 | 2 | zf-RING_5 | 97 | 129 | 6.5e-06 | 25.7 | 0.014 | 14.0 | 5.5 |
| pfu_aug2.0_3232.1_09084.t1 | 3 | 2 | zf-C3HC4_2 | 112 | 129 | 2.4e-09 | 37.0 | 0.032 | 32.0 | 4.6 |
| pfu_aug2.0_3232.1_09084.t1 | 3 | 3 | zf-RING_UBOX | 113 | 127 | 1.2e-07 | 31.2 | 1.8 | 1800.0 | -1.3 |
| pfu_aug2.0_3232.1_09084.t1 | 2 | 2 | zf-C3HC4_4 | 114 | 126 | 3.6e-07 | 29.9 | 0.19 | 190.0 | 2.0 |
| pfu_aug2.0_3232.1_09084.t1 | 4 | 4 | zf-B_box | 157 | 197 | 4.3e-11 | 42.5 | 3.7e-13 | 3.6e-10 | 39.5 |
| pfu_aug2.0_3232.1_09084.t1 | 3 | 3 | zf-C3HC4_2 | 172 | 184 | 2.4e-09 | 37.0 | 8.9 | 8800.0 | -3.2 |
| pfu_aug2.0_3232.1_09084.t1 | 4 | 3 | zf-RING_5 | 172 | 176 | 6.5e-06 | 25.7 | 5.0 | 4900.0 | -2.7 |
| pfu_aug2.0_3232.1_09084.t1 | 3 | 3 | zf-C3HC4 | 178 | 184 | 1.4e-09 | 37.4 | 8.1 | 8000.0 | -3.4 |
| pfu_aug2.0_3232.1_09084.t1 | 4 | 4 | zf-RING_5 | 301 | 325 | 6.5e-06 | 25.7 | 2.3 | 2300.0 | -1.6 |
Transcript
| Transcript ID | pfu_aug2.0_3232.1_09084.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3232.1_09084.t1 atggcgaaagcaccgctatcaacattaagtaatgattttctcacatgtaccatttgtttggaaattttcaaggaaccaaa gattttatcctgtttgcactctttctgcaagaactgtttagaaaaacatttagaaaagtctaaaacaagtaacagcatcg catgtccactctgtcgtgaaatgacaagtataagtaaagatgggattcagggactgaaaaataactttttcatgacgaat ctcatagacttcagtgaatcaacatcagctcagttcacaaacaaaaactgctcattctgtgcgctgatgaagaaaaggat tcctgcacttggcaagtgtctgacatgcggagacttcctttgccccgaatgttaccagcgacataagtttacaactaaaa cctttcaacacgaaactgcaacacttgaagacttgcaaagtggaaaatacaatgaaaaactaaggctaaatcaagaaatt ccatgtgaagaacatagaaatactctccggtatttctgtgatacctgcaatgtcccagtatgtccagactgtgccatcct cgaccacagagaaggacacgtcatagtcaagccatcagaagcaatagcgaaaaggcagcaagaaattggcagcttgttgg agggtttagacaagaaaatgactgatttcaaacaaaaaagctcccttctagaagaagaggaacgaaagatcgataccact caacgagacatgtcgcaacttattcgagaaacaatcgacaatctggtgaagaaaattttagcagaaggtcaaaaggcaca agaaacattacaaacgcacatcaacgctagaagacaggcattaatccaagtaagatcagagcaaggggaaaatattgcac ttctgcaaaactctctggagttttgtcaaagagtaataagtaatggaatggaaggggaaatagtattccttcaggaaatg attcactgcactgttgatgacgatgaatgcgagccacagataacctctgtagactggtttgatgaccaatcgtttgttgt atcagacgaagcaaacgaaaaaattaaaaagtacaataccaatggcaaacttttgaagtcccaaaaagtgaagagtgtac aaacagttgcttgtgtgcgtaatacggtgttctgcggactcaataacggtcaaatcaaaatgatcacaacaaactgtaat gaactcaacgtggaaacacagaaatatggtttctgtgttccagttgccataggaaatgcggaacgaaatgcattactcct tggcggttccagttttcaaatagtggatgaatcgggaaatatttcaaagtccgtcccttttagagataaaagccggcaca cagatgaaaaatga |
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Protein
| Protein ID | pfu_aug2.0_3232.1_09084.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3232.1_09084.t1 MAKAPLSTLSNDFLTCTICLEIFKEPKILSCLHSFCKNCLEKHLEKSKTSNSIACPLCREMTSISKDGIQGLKNNFFMTN LIDFSESTSAQFTNKNCSFCALMKKRIPALGKCLTCGDFLCPECYQRHKFTTKTFQHETATLEDLQSGKYNEKLRLNQEI PCEEHRNTLRYFCDTCNVPVCPDCAILDHREGHVIVKPSEAIAKRQQEIGSLLEGLDKKMTDFKQKSSLLEEEERKIDTT QRDMSQLIRETIDNLVKKILAEGQKAQETLQTHINARRQALIQVRSEQGENIALLQNSLEFCQRVISNGMEGEIVFLQEM IHCTVDDDECEPQITSVDWFDDQSFVVSDEANEKIKKYNTNGKLLKSQKVKSVQTVACVRNTVFCGLNNGQIKMITTNCN ELNVETQKYGFCVPVAIGNAERNALLLGGSSFQIVDESGNISKSVPFRDKSRHTDEK |
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