Gene
| Gene Model ID | pfu_aug2.0_325.1_17284 |
|---|---|
| Locus | scaffold325.1 : 30261 ... 36915 : - |
| To GenomeBrowser | scaffold325.1:30261..36915 |
| Genes list of scaffold | scaffold325.1 |
| Synonym | pfu_aug1.0_4670.1_30765 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| glutamate-rich wd repeat containing 1 | GO:0044424 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_325.1_17284.t1 | 4 | 1 | WD40 | 70 | 84 | 2.4e-25 | 87.4 | 0.002 | 9.8 | 6.2 |
| pfu_aug2.0_325.1_17284.t1 | 4 | 2 | WD40 | 99 | 132 | 2.4e-25 | 87.4 | 3.5e-15 | 1.7e-11 | 43.5 |
| pfu_aug2.0_325.1_17284.t1 | 4 | 3 | WD40 | 143 | 178 | 2.4e-25 | 87.4 | 2.4e-12 | 1.2e-08 | 34.4 |
| pfu_aug2.0_325.1_17284.t1 | 4 | 4 | WD40 | 224 | 231 | 2.4e-25 | 87.4 | 2.3 | 11000.0 | -3.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_325.1_17284.t1 | gi|28277328|gb|AAH44118.1| | Grwd-pending-prov protein [Xenopus laevis] | 0.0 |
| pfu_aug2.0_325.1_17284.t1 | gi|351542175|ref|NP_001080628.2| | glutamate-rich WD repeat containing 1 [Xenopus laevis] | 0.0 |
| pfu_aug2.0_325.1_17284.t1 | gi|89272848|emb|CAJ82130.1| | glutamate-rich WD repeat containing 1 [Xenopus (Silurana) tropicalis] | 0.0 |
| pfu_aug2.0_325.1_17284.t1 | gi|351542149|ref|NP_989268.3| | glutamate-rich WD repeat-containing protein 1 [Xenopus (Silurana) tropicalis] | 0.0 |
| pfu_aug2.0_325.1_17284.t1 | gi|291226564|ref|XP_002733247.1| | PREDICTED: glutamate-rich WD repeat-containing protein 1-like [Saccoglossus kowalevskii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_325.1_17284.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_325.1_17284.t1 atggatccagaaaacacagaagaaatgagagaccattcagatgatgacgatgagatggaggaagaggatgatgatgattc tggcgatgaggaaatgagtaatgagacaacagagaaaagagtttaccttcctacagaccccattgatgaggaagaagagc ttgtttgtgatgaatcagcttatgttatgtatcatcaagctcaaactggtaagctagctacaggagactgtaataagaac attcacatctgggttccccaggagggagggtcatggcatgttgaccagcggccgtacagtggacatacgtcgtctgtgga agacatacaatggtcacctaatgaggagaatgtatttgcctcatgttcagtagatagaactatccgtatttgggattcaa gggcggcacctaataaagcttgtatgttgacgacagacgaagcacatgaacgggacatcaatgttatacactggaacagg aaagaacccttcttagcttcaggtggtgatgatggagtcatcaaaatatgggacttgagacaatttcagatctccatctg ggatctggccgtggaaaaagacaaagacgctccaggaaaatcagacggagaacctgacgttcctcctcagttactattta tacatcaaggacagacagacattaaagaattacactggcatcctcagttaccgggtgtaatgatcagtactgctcttagt ggatttaatgtgtttagaactatcagtgtgtga |
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Protein
| Protein ID | pfu_aug2.0_325.1_17284.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_325.1_17284.t1 MDPENTEEMRDHSDDDDEMEEEDDDDSGDEEMSNETTEKRVYLPTDPIDEEEELVCDESAYVMYHQAQTGKLATGDCNKN IHIWVPQEGGSWHVDQRPYSGHTSSVEDIQWSPNEENVFASCSVDRTIRIWDSRAAPNKACMLTTDEAHERDINVIHWNR KEPFLASGGDDGVIKIWDLRQFQISIWDLAVEKDKDAPGKSDGEPDVPPQLLFIHQGQTDIKELHWHPQLPGVMISTALS GFNVFRTISV |
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