Gene
| Gene Model ID | pfu_aug2.0_325.1_17291 |
|---|---|
| Locus | scaffold325.1 : 151766 ... 161520 : + |
| To GenomeBrowser | scaffold325.1:151766..161520 |
| Genes list of scaffold | scaffold325.1 |
| Synonym | pfu_aug1.0_609.1_15150 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| ccr4-not transcription complex subunit 3 isoform x1 | GO:0000289 GO:0000932 GO:0005515 GO:0005829 GO:0006351 GO:0007275 GO:0010468 GO:0030014 GO:0080090 GO:2000036 GO:2000112 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_325.1_17291.t1 | 2 | 1 | NOT2_3_5 | 49 | 49 | 4.7e-33 | 113.9 | 0.2 | 3000.0 | -2.0 |
| pfu_aug2.0_325.1_17291.t1 | 2 | 2 | NOT2_3_5 | 100 | 204 | 4.7e-33 | 113.9 | 3.2e-37 | 4.7e-33 | 113.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_325.1_17291.t1 | gi|260808745|ref|XP_002599167.1| | hypothetical protein BRAFLDRAFT_68754 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_325.1_17291.t1 | gi|676496781|ref|XP_009067327.1| | hypothetical protein LOTGIDRAFT_179956 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_325.1_17291.t1 | gi|635041265|ref|XP_007996174.1| | PREDICTED: CCR4-NOT transcription complex subunit 3 isoform X2 [Chlorocebus sabaeus] | 0.0 |
| pfu_aug2.0_325.1_17291.t1 | gi|635041261|ref|XP_007996172.1| | PREDICTED: CCR4-NOT transcription complex subunit 3 isoform X1 [Chlorocebus sabaeus] | 0.0 |
| pfu_aug2.0_325.1_17291.t1 | gi|530416629|ref|XP_005259015.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_325.1_17291.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_325.1_17291.t1 atgtcatcattaaagtcaatagcacaacaggccgtggtaaatgcaggtttagaaaaccagattcccacccccacttcaca aacgtcaataccaacagagtcaagagttcaatttaacagttcaacaactccctcctcgagttcccagttagtagtagggc caccatcatcggtgtcgcccaccgaccaaacatcgcagcagcctcagaccacaacaatacatctcaatcctcttctcggt atagcaccgttaggacccgtgccactcaaaacagagaatatctatcaactgtctatgttagaagctgcatatcaccattt accacatccctcagactcagagagaataaggcattacttgccacgcaattattgccctacccttccgtattacccacaac taccccctccacattcagatacagtggaattctttcaacgactgtctacggagacactcttcttcattttctactatatg gagggtacaaaggctcaatacttggcagcaaaagcattaaaaaagcagtcatggaggtttcatacgaaatacatgatgtg gtttcagaggcatgaagaaccaaagaccatcaccgaggactttgaacaggtagtgacgcatatgcttacgtaa |
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Protein
| Protein ID | pfu_aug2.0_325.1_17291.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_325.1_17291.t1 MSSLKSIAQQAVVNAGLENQIPTPTSQTSIPTESRVQFNSSTTPSSSSQLVVGPPSSVSPTDQTSQQPQTTTIHLNPLLG IAPLGPVPLKTENIYQLSMLEAAYHHLPHPSDSERIRHYLPRNYCPTLPYYPQLPPPHSDTVEFFQRLSTETLFFIFYYM EGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITEDFEQVVTHMLT |
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