Gene
| Gene Model ID | pfu_aug2.0_325.1_17297 |
|---|---|
| Locus | scaffold325.1 : 227710 ... 247045 : + |
| To GenomeBrowser | scaffold325.1:227710..247045 |
| Genes list of scaffold | scaffold325.1 |
| Synonym | pfu_aug1.0_8091.1_02544 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| actin-related protein 2 3 complex subunit 1a | GO:0015629 GO:0030833 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_325.1_17297.t2 | 5 | 1 | WD40 | 52 | 87 | 3.0e-19 | 68.1 | 1.2e-11 | 1.7e-07 | 30.8 |
| pfu_aug2.0_325.1_17297.t2 | 5 | 2 | WD40 | 164 | 199 | 3.0e-19 | 68.1 | 7.5e-08 | 0.0011 | 18.7 |
| pfu_aug2.0_325.1_17297.t2 | 5 | 3 | WD40 | 229 | 260 | 3.0e-19 | 68.1 | 3.2e-06 | 0.047 | 13.5 |
| pfu_aug2.0_325.1_17297.t2 | 5 | 4 | WD40 | 285 | 308 | 3.0e-19 | 68.1 | 0.061 | 900.0 | 0.0 |
| pfu_aug2.0_325.1_17297.t2 | 5 | 5 | WD40 | 349 | 383 | 3.0e-19 | 68.1 | 6.6e-06 | 0.097 | 12.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_325.1_17297.t2 | gi|558096802|ref|XP_006081127.1| | PREDICTED: actin-related protein 2/3 complex subunit 1A [Myotis lucifugus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_325.1_17297.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_325.1_17297.t1 atgacaacccacagttttggtatagagcccattacagtccatgcatggaacagcaataggacagagatagccttatctcc caacaattctgatgtgaagatttataagaaggttccaaatgattacatagaagtggccactttaacggaacacggtcagc atgtaacgggcatagactgggctccaacttcaaacagaatcgtcacttgtggggcagacagaaatgcttacgtgtgggag ccaaaaaatggagagtggaaaccacatcttgtgatcctgcgtattaacgtgctgccacctgtgtccgctggtcacctaaa ggacaaatttgctgtgggtagcgggtcaagagtgatctctatctgctactttgaggaggaaaacaattggtgggtcagca agcacatcaagaagccaatcagatcaactgttacatgcctggactggcatcctaacaacatcttggtgggagcaggatcc tctgacttcaaagctagggtgttttctgcttacatcaaggaaatagagagtaagccatcagccacaagctggggagcaaa gatgccttttggaaatatgatgcaggaaatctccaatggtggaggaggttgggtacatgatatatcattctcaccatctg gggatcgcatggcttgggtagggcacgactccagtatctctgtggtggatgctgccaacgactgcaaagtgactgtagtg aaggggtccttccttcctttcatgagtttgacttgggttactgctaacagcattgttgctgtgggatatgacaacaatcc taaactgttgacatactctgatgatggaaagttgactgttaacactgatcttgacaaacctcaggaaaaggaagtgggaa ctatgagtgcaatgaacagattcaagaatctggagaaaaaagcaacgacagaagattccacttctctgaagactaagcac cagaatactataactcaggtatctatctacgctggagacaagtctaactgtactaagttctgtactacaggaagagacgg tcaaatgatcatatgggacttcaagtctctggagcagtccatcgcaggtctcaagattgcttga |
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| Transcript ID | pfu_aug2.0_325.1_17297.t2 |
| Definition | - |
>pfu_aug2.0_325.1_17297.t2 atgttatcttaccccatagggatgacaacccacagttttggtatagagcccattacagtccatgcatggaacagcaatag gacagagatagccttatctcccaacaattctgatgtgaagatttataagaaggttccaaatgattacatagaagtggcca ctttaacggaacacggtcagcatgtaacgggcatagactgggctccaacttcaaacagaatcgtcacttgtggggcagac agaaatgcttacgtgtgggagccaaaaaatggagagtggaaaccacatcttgtgatcctgcgtattaacgtgctgccacc tgtgtccgctggtcacctaaagtttgaaatattttcgaaattaacaaaagaattcatatctaactactgtatatgtggaa tcattcgctaggacaaatttgctgtgggtagcgggtcaagagtgatctctatctgctactttgaggaggaaaacaattgg tgggtcagcaagcacatcaagaagccaatcagatcaactgttacatgcctggactggcatcctaacaacatcttggtggg agcaggatcctctgacttcaaagctagggtgttttctgcttacatcaaggaaatagagagtaagccatcagccacaagct ggggagcaaagatgccttttggaaatatgatgcaggaaatctccaatggtggaggaggttgggtacatgatatatcattc tcaccatctggggatcgcatggcttgggtagggcacgactccagtatctctgtggtggatgctgccaacgactgcaaagt gactgtagtgaaggggtccttccttcctttcatgagtttgacttgggttactgctaacagcattgttgctgtgggatatg acaacaatcctaaactgttgacatactctgatgatggaaagttgactgttaacactgatcttgacaaacctcaggaaaag gaagtgggaactatgagtgcaatgaacagattcaagaatctggagaaaaaagcaacgacagaagattccacttctctgaa gactaagcaccagaatactataactcaggtatctatctacgctggagacaagtctaactgtactaagttctgtactacag gaagagacggtcaaatgatcatatgggacttcaagtctctggagcagtccattgcaggtctcaagattgcttaa |
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Protein
| Protein ID | pfu_aug2.0_325.1_17297.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_325.1_17297.t1 MTTHSFGIEPITVHAWNSNRTEIALSPNNSDVKIYKKVPNDYIEVATLTEHGQHVTGIDWAPTSNRIVTCGADRNAYVWE PKNGEWKPHLVILRINVLPPVSAGHLKDKFAVGSGSRVISICYFEEENNWWVSKHIKKPIRSTVTCLDWHPNNILVGAGS SDFKARVFSAYIKEIESKPSATSWGAKMPFGNMMQEISNGGGGWVHDISFSPSGDRMAWVGHDSSISVVDAANDCKVTVV KGSFLPFMSLTWVTANSIVAVGYDNNPKLLTYSDDGKLTVNTDLDKPQEKEVGTMSAMNRFKNLEKKATTEDSTSLKTKH QNTITQVSIYAGDKSNCTKFCTTGRDGQMIIWDFKSLEQSIAGLKIA |
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| Protein ID | pfu_aug2.0_325.1_17297.t2 |
| Definition | - |
>pfu_aug2.0_325.1_17297.t2 MLSYPIGMTTHSFGIEPITVHAWNSNRTEIALSPNNSDVKIYKKVPNDYIEVATLTEHGQHVTGIDWAPTSNRIVTCGAD RNAYVWEPKNGEWKPHLVILRINVLPPVSAGHLKFEIFSKLTKEFISNYCICGIIRXDKFAVGSGSRVISICYFEEENNW WVSKHIKKPIRSTVTCLDWHPNNILVGAGSSDFKARVFSAYIKEIESKPSATSWGAKMPFGNMMQEISNGGGGWVHDISF SPSGDRMAWVGHDSSISVVDAANDCKVTVVKGSFLPFMSLTWVTANSIVAVGYDNNPKLLTYSDDGKLTVNTDLDKPQEK EVGTMSAMNRFKNLEKKATTEDSTSLKTKHQNTITQVSIYAGDKSNCTKFCTTGRDGQMIIWDFKSLEQSIAGLKIA |
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