Gene
| Gene Model ID | pfu_aug2.0_3253.1_12414 |
|---|---|
| Locus | scaffold3253.1 : 63085 ... 65205 : - |
| To GenomeBrowser | scaffold3253.1:63085..65205 |
| Genes list of scaffold | scaffold3253.1 |
| Synonym | pfu_aug1.0_7659.1_45702 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3253.1_12414.t1 | 2 | 1 | zf-B_box | 17 | 58 | 4.1e-16 | 58.5 | 1.1e-09 | 4.3e-06 | 26.5 |
| pfu_aug2.0_3253.1_12414.t1 | 2 | 2 | zf-B_box | 73 | 109 | 4.1e-16 | 58.5 | 4.6e-13 | 1.7e-09 | 37.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3253.1_12414.t1 | gi|410911172|ref|XP_003969064.1| | PREDICTED: E3 ubiquitin-protein ligase TRIM71 [Takifugu rubripes] | 3.0e-11 |
Transcript
| Transcript ID | pfu_aug2.0_3253.1_12414.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3253.1_12414.t1 atggcgtttgcctcgtcaagaataggggcacaggaggccattataaagtcatgtgacttatgtgaagatgacgagaacgt taactggttctgtaaggactgtaatcaaaatctgtgtgacagatgtaaaaggtctcatcttcgaagtaatgtttcaaagt cacacatcatactttcgatttccgaaggatttgaattggggaaaaggaatttatcgaacatttgtcaagatcatgacgaa ctatttacctttttttgcagaacttgtgataggaacatttgttcgaaatgtttgtcaacgaaacataaaaagcatgactt cgtagaattgcgtgagcgtcaatctgatgtacagaagcagttagatgatgtcatcaaagaaaaggaaacagaaaagcaga tgatgacaagaaattttgatgatttggttcagcatgaaatccaatcagagaagaaaaataaagacaagtgtgccataatc aatgaccgaattaaagacattaaaatggccgccgatgaggaagggggaaaaatcataagatcccttaattcaacaaaaca acaggaagacaaagaggtgaaagacggtaaacataagatccagacccagaccggactctatgacaaagagatccaatccg tacaacaagaactccgactccagacggcgtcatcattacacggcttcgtcacggaatcaatgaaaaaacttaagtcattg aagccggtatctattgcgataccagacaaacaacaattagcttatagatacgtgtacaagatgagctctgactgctctac agtcctccatcagttacctactagaatgagttatacctgtggttacatagcgtgtttacagtcaggtgatgctgttgtgt cttacagtggagcgtcctacgtagacagattcacctctagcgggagaagagtagaattcacagacctatcaccgaagaaa actcacgatatagttgtcaattacaatgacgaggttgctatcaatgttgatttgagatattttattatattttcaaacaa agggaaacaactcagaaaaattgaagtcgatggcggaataacaacattttgcacagacagagaaggacacattatcgttg cacacaggggattatcaaaccttacaatactagattacaggaatggagcagtcataaaatcatgggaagtttccatatcc gacataaaacgtcttacatgtgacagatatggaaacgttctagccacgaacatgggggaaaatgtttatttcttcagcaa aaacggagatgtccaggaaactttcacagtggactgtaatggaatcattggaatctgtgttaatcaggacgatcatttgt tgatactgatggttacgaagcgtaaattcgaaataaaagttacgaactactag |
|
Protein
| Protein ID | pfu_aug2.0_3253.1_12414.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3253.1_12414.t1 MAFASSRIGAQEAIIKSCDLCEDDENVNWFCKDCNQNLCDRCKRSHLRSNVSKSHIILSISEGFELGKRNLSNICQDHDE LFTFFCRTCDRNICSKCLSTKHKKHDFVELRERQSDVQKQLDDVIKEKETEKQMMTRNFDDLVQHEIQSEKKNKDKCAII NDRIKDIKMAADEEGGKIIRSLNSTKQQEDKEVKDGKHKIQTQTGLYDKEIQSVQQELRLQTASSLHGFVTESMKKLKSL KPVSIAIPDKQQLAYRYVYKMSSDCSTVLHQLPTRMSYTCGYIACLQSGDAVVSYSGASYVDRFTSSGRRVEFTDLSPKK THDIVVNYNDEVAINVDLRYFIIFSNKGKQLRKIEVDGGITTFCTDREGHIIVAHRGLSNLTILDYRNGAVIKSWEVSIS DIKRLTCDRYGNVLATNMGENVYFFSKNGDVQETFTVDCNGIIGICVNQDDHLLILMVTKRKFEIKVTNY |
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