Gene
| Gene Model ID | pfu_aug2.0_326.1_20620 |
|---|---|
| Locus | scaffold326.1 : 468794 ... 478900 : - |
| To GenomeBrowser | scaffold326.1:468794..478900 |
| Genes list of scaffold | scaffold326.1 |
| Synonym | NA |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| transcription elongation factor b polypeptide 2 | GO:0000079 GO:0003746 GO:0006414 GO:0019901 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_326.1_20620.t1 | 1 | 1 | ubiquitin | 11 | 63 | 2.4e-08 | 33.2 | 7.4e-12 | 3.7e-08 | 32.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_326.1_20620.t1 | gi|676436206|ref|XP_009047806.1| | hypothetical protein LOTGIDRAFT_225362 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_326.1_20620.t1 | gi|524883861|ref|XP_005098556.1| | PREDICTED: transcription elongation factor B polypeptide 2-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_326.1_20620.t1 | gi|291228348|ref|XP_002734124.1| | PREDICTED: transcription elongation factor B polypeptide 2-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_326.1_20620.t1 | gi|632987572|ref|XP_007882630.1| | PREDICTED: transcription elongation factor B polypeptide 2 [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_326.1_20620.t1 | gi|319401877|ref|NP_001187283.1| | transcription elongation factor b polypeptide 2 [Ictalurus punctatus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_326.1_20620.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_326.1_20620.t1 atggatgtgttcttgatgattcggcgcaagaagtgcaccatctttacagatgcaaaggaatcaacacccgtaagtgaggt taaaaagatagtggagggaatactgaaaatgagacctgaggatcaaaaattattcaaagatgatcagccattagatgaca ataagacgctaggagattatggtttcacatttgcaacagccagagcacaggcacctgctactattgggttagcccttaag caagatgatggtgagtttgagcctttggaggttactccattatcgagtccaccagaattaccagacgtcatgaaacccca ggattcacagtcaactcatgcacaggaacaaacagcgtcttaa |
|
Protein
| Protein ID | pfu_aug2.0_326.1_20620.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_326.1_20620.t1 MDVFLMIRRKKCTIFTDAKESTPVSEVKKIVEGILKMRPEDQKLFKDDQPLDDNKTLGDYGFTFATARAQAPATIGLALK QDDGEFEPLEVTPLSSPPELPDVMKPQDSQSTHAQEQTAS |
|