Gene
| Gene Model ID | pfu_aug2.0_327.1_23863 |
|---|---|
| Locus | scaffold327.1 : 16436 ... 29037 : + |
| To GenomeBrowser | scaffold327.1:16436..29037 |
| Genes list of scaffold | scaffold327.1 |
| Synonym | pfu_aug1.0_1009.1_00582 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_327.1_23863.t1 | 8 | 1 | zf-H2C2_2 | 350 | 364 | 6.1e-21 | 73.6 | 0.00065 | 0.8 | 10.1 |
| pfu_aug2.0_327.1_23863.t1 | 7 | 1 | zf-C2H2 | 355 | 376 | 1.4e-24 | 84.9 | 0.00013 | 0.16 | 12.3 |
| pfu_aug2.0_327.1_23863.t1 | 7 | 1 | zf-C2H2_4 | 355 | 376 | 4.2e-22 | 76.7 | 0.0015 | 1.8 | 9.0 |
| pfu_aug2.0_327.1_23863.t1 | 8 | 2 | zf-H2C2_2 | 371 | 393 | 6.1e-21 | 73.6 | 4.7e-05 | 0.058 | 13.7 |
| pfu_aug2.0_327.1_23863.t1 | 7 | 2 | zf-C2H2 | 382 | 406 | 1.4e-24 | 84.9 | 9.7e-05 | 0.12 | 12.7 |
| pfu_aug2.0_327.1_23863.t1 | 7 | 2 | zf-C2H2_4 | 382 | 406 | 4.2e-22 | 76.7 | 0.002 | 2.5 | 8.6 |
| pfu_aug2.0_327.1_23863.t1 | 8 | 3 | zf-H2C2_2 | 399 | 422 | 6.1e-21 | 73.6 | 5.8e-07 | 0.00072 | 19.7 |
| pfu_aug2.0_327.1_23863.t1 | 7 | 3 | zf-C2H2 | 412 | 434 | 1.4e-24 | 84.9 | 1.9e-09 | 2.3e-06 | 27.5 |
| pfu_aug2.0_327.1_23863.t1 | 7 | 3 | zf-C2H2_4 | 412 | 434 | 4.2e-22 | 76.7 | 3.5e-09 | 4.3e-06 | 26.6 |
| pfu_aug2.0_327.1_23863.t1 | 8 | 4 | zf-H2C2_2 | 426 | 452 | 6.1e-21 | 73.6 | 5.4e-06 | 0.0067 | 16.6 |
| pfu_aug2.0_327.1_23863.t1 | 7 | 4 | zf-C2H2 | 441 | 463 | 1.4e-24 | 84.9 | 0.00014 | 0.18 | 12.2 |
| pfu_aug2.0_327.1_23863.t1 | 7 | 4 | zf-C2H2_4 | 441 | 463 | 4.2e-22 | 76.7 | 0.0048 | 6.0 | 7.4 |
| pfu_aug2.0_327.1_23863.t1 | 8 | 5 | zf-H2C2_2 | 456 | 479 | 6.1e-21 | 73.6 | 0.18 | 230.0 | 2.3 |
| pfu_aug2.0_327.1_23863.t1 | 7 | 5 | zf-C2H2 | 472 | 493 | 1.4e-24 | 84.9 | 0.0018 | 2.2 | 8.7 |
| pfu_aug2.0_327.1_23863.t1 | 7 | 5 | zf-C2H2_4 | 472 | 493 | 4.2e-22 | 76.7 | 8.8e-05 | 0.11 | 12.8 |
| pfu_aug2.0_327.1_23863.t1 | 8 | 6 | zf-H2C2_2 | 486 | 518 | 6.1e-21 | 73.6 | 4.6e-06 | 0.0057 | 16.8 |
| pfu_aug2.0_327.1_23863.t1 | 7 | 6 | zf-C2H2 | 507 | 529 | 1.4e-24 | 84.9 | 7.2e-07 | 0.00088 | 19.4 |
| pfu_aug2.0_327.1_23863.t1 | 7 | 6 | zf-C2H2_4 | 507 | 529 | 4.2e-22 | 76.7 | 6.8e-07 | 0.00084 | 19.5 |
| pfu_aug2.0_327.1_23863.t1 | 8 | 7 | zf-H2C2_2 | 522 | 545 | 6.1e-21 | 73.6 | 3.9e-08 | 4.8e-05 | 23.4 |
| pfu_aug2.0_327.1_23863.t1 | 7 | 7 | zf-C2H2_4 | 535 | 558 | 4.2e-22 | 76.7 | 1.2e-06 | 0.0014 | 18.7 |
| pfu_aug2.0_327.1_23863.t1 | 7 | 7 | zf-C2H2 | 537 | 558 | 1.4e-24 | 84.9 | 7.0e-07 | 0.00086 | 19.5 |
| pfu_aug2.0_327.1_23863.t1 | 8 | 8 | zf-H2C2_2 | 549 | 562 | 6.1e-21 | 73.6 | 0.041 | 51.0 | 4.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_327.1_23863.t1 | gi|260784111|ref|XP_002587112.1| | hypothetical protein BRAFLDRAFT_156770 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_327.1_23863.t1 | gi|524923342|ref|XP_005065923.1| | PREDICTED: zinc finger protein PLAGL1 [Mesocricetus auratus] | 0.0 |
| pfu_aug2.0_327.1_23863.t1 | gi|410932117|ref|XP_003979440.1| | 0.0 | |
| pfu_aug2.0_327.1_23863.t1 | gi|632947730|ref|XP_007889196.1| | PREDICTED: zinc finger protein PLAG1 [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_327.1_23863.t1 | gi|602707667|ref|XP_007464102.1| | PREDICTED: zinc finger protein PLAG1 isoform X1 [Lipotes vexillifer] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_327.1_23863.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_327.1_23863.t1 atgtacaaggatggcaaaacttgcacagatgcccaaggagtctttgcaaagaaaataatacaagttcgcacaaagtttgg acctttacttgcccctgttaagtgtagacagagatctcagccccaagaagtcccacccagtgatggtatccctgtggggg caggaggggatggattacacatacaggaacagcagggaggcgtggtggatcattctgtcctgtccacggaacagatccaa gaggtggcaatggatcaacacaatgtggagcaccaagatattgtacagcaggcactgggtatcgtcaaggtaacagaaca acaaataatggccgatgagatccagcagcagggtctgtccggtccctatggtgatgtgtcaaccacaatcccccactcat tacctgccaatagtatgacagacacagtcagtctggtcactactttggccagtggagacatgacagctgcaggtcagtat gctgccacactggacacagaacaacaacaacagctgattgtagcaggattaatgacacagagtcatctccccctgcatag tagctacgcccctgtatatacacaaccgataaccatcacagacaataccaagcaaattaatggtcaagtgacagaggaaa caggcagtatggtagagaaaaataatgggaaaagcctgaagaaagaaatggtagatccagctgatcaagaatttgaactg aagattttccatgaggatgggtatgaggactgtctagatttgtctgatgaggagtcgtgtaactggatgatgttgcctat accttccaatactgagataagagtatggtactcgccagattatgctaagcagatagggaaggaacttttacttgagaaaa aggaagaaaaaccagtcattcgtgttaaaaatgatgaggatgtgacactagctatgttagaggatgtagatgatgttcta gatgatgacgattttccgtatcccaaaccaaaacgaagaggaagaaaacgtcgccctccaggtgccccaaaaattcccag aatacccaagaaggatccacttccttgtccccactgtggagagaaattcacgaaagaagccctctttgtgatccatgttg ctgagcatacaggcattaaacctttcatttgtgaggtggaggaatgtggtaaaggatttatgtccaagtttaagcttgaa cgtcataggttgattcacacatgtcctcgaggtcataagtgtccttactgtgacaagagctttaataggaaagatcacct caaaaaccacatgattacccatgatccaaataaaaaacgatgggtatgtgaagagtgcggcaaggagtactcgtataact tctcttatagaactcataaagcatttcatgatgcagatgctggtcggacgctagagtgcggtatttgcagaaaggttcat aatactagagaagaactcttgtatcatttaaaagttcacagtggtgctagatctgttaaaaactgtacagaaaaaactca tgcttgtgatgattgtggcaaaaaattttacacgcgcaaggatgttagacgtcatatgatcactcacacaaagaaaaagg actttctatgtcaatattgtcctcaaaggtttgggaggaaagatcatctcacaaggcatttacgatcttcccactctggg gacaattctaatcagaagatacgtacaccaaaaggagagagaaaagtacgaccagagccagcatctatgattgggcttac catcccaaatactgaccaaaatctcctgggatcaacacagcaatctctcaactaccaactacatgcactgccacaggaat tccgtgacgtgccagtacctgtgccaatacacatgtttgataaccagaaccaacagctgataacactggctggtgctaca gtgacccagaatcctattattcaagctggacaacaacagcaacaacaagcccagcaacaacaacaccaggtgctacaagc cattccacaacagctggccaatcagattcaggttattgataaccgttacatcatagatagttcagctgccgtacgtcaac aacaacaacaacaacaacacatagacaacacaaatcctaatgaatatagggccttacaagccgtctcacaatctcatgtg ccaacaatgtatatgcaagtaggccagcaacaacaacagcagcaacctcagcaacaacaacaacaacaacagatagctgt tgccaacagggaagtgaacatagacttaacacgtaatggtgctgtacaagattatcaggctgttgtacctcggtctgatc agcaaaatccacgacccacagtggtacaagctgctgataataataacagacagaacacccaacaggcacagacattctcc acattgattggttatatggagacactacgttttctagagacccttccaacccctagtgcccccaacagtgtgctggccca gatgacgatgcagcagacagacggacagcaggctacagctaccatgataccaatacagccgtccctggcgtacactacag ctacaaggttgtgctctattgattttgagatcaaagttcaaggttacaagactttatcaagtttatga |
|
Protein
| Protein ID | pfu_aug2.0_327.1_23863.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_327.1_23863.t1 MYKDGKTCTDAQGVFAKKIIQVRTKFGPLLAPVKCRQRSQPQEVPPSDGIPVGAGGDGLHIQEQQGGVVDHSVLSTEQIQ EVAMDQHNVEHQDIVQQALGIVKVTEQQIMADEIQQQGLSGPYGDVSTTIPHSLPANSMTDTVSLVTTLASGDMTAAGQY AATLDTEQQQQLIVAGLMTQSHLPLHSSYAPVYTQPITITDNTKQINGQVTEETGSMVEKNNGKSLKKEMVDPADQEFEL KIFHEDGYEDCLDLSDEESCNWMMLPIPSNTEIRVWYSPDYAKQIGKELLLEKKEEKPVIRVKNDEDVTLAMLEDVDDVL DDDDFPYPKPKRRGRKRRPPGAPKIPRIPKKDPLPCPHCGEKFTKEALFVIHVAEHTGIKPFICEVEECGKGFMSKFKLE RHRLIHTCPRGHKCPYCDKSFNRKDHLKNHMITHDPNKKRWVCEECGKEYSYNFSYRTHKAFHDADAGRTLECGICRKVH NTREELLYHLKVHSGARSVKNCTEKTHACDDCGKKFYTRKDVRRHMITHTKKKDFLCQYCPQRFGRKDHLTRHLRSSHSG DNSNQKIRTPKGERKVRPEPASMIGLTIPNTDQNLLGSTQQSLNYQLHALPQEFRDVPVPVPIHMFDNQNQQLITLAGAT VTQNPIIQAGQQQQQQAQQQQHQVLQAIPQQLANQIQVIDNRYIIDSSAAVRQQQQQQQHIDNTNPNEYRALQAVSQSHV PTMYMQVGQQQQQQQPQQQQQQQQIAVANREVNIDLTRNGAVQDYQAVVPRSDQQNPRPTVVQAADNNNRQNTQQAQTFS TLIGYMETLRFLETLPTPSAPNSVLAQMTMQQTDGQQATATMIPIQPSLAYTTATRLCSIDFEIKVQGYKTLSSL |
|