Gene
| Gene Model ID | pfu_aug2.0_327.1_23864 |
|---|---|
| Locus | scaffold327.1 : 41374 ... 46225 : - |
| To GenomeBrowser | scaffold327.1:41374..46225 |
| Genes list of scaffold | scaffold327.1 |
| Synonym | pfu_aug1.0_1009.1_00581 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_327.1_23864.t1 | 1 | 1 | adh_short | 8 | 169 | 3.8e-30 | 105.0 | 4.4e-33 | 5.0e-30 | 104.6 |
| pfu_aug2.0_327.1_23864.t1 | 1 | 1 | KR | 9 | 113 | 1.7e-13 | 50.6 | 2.8e-16 | 3.2e-13 | 49.7 |
| pfu_aug2.0_327.1_23864.t1 | 1 | 1 | Epimerase | 9 | 122 | 5.6e-06 | 25.9 | 9.6e-09 | 1.1e-05 | 25.0 |
| pfu_aug2.0_327.1_23864.t1 | 1 | 1 | NAD_binding_10 | 10 | 193 | 3.0e-07 | 30.6 | 4.8e-10 | 5.5e-07 | 29.7 |
| pfu_aug2.0_327.1_23864.t1 | 1 | 1 | adh_short_C2 | 16 | 225 | 1.1e-15 | 58.0 | 1.2e-18 | 1.4e-15 | 57.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_327.1_23864.t1 | gi|349732218|ref|NP_001002143.2| | dehydrogenase/reductase (SDR family) member 11b [Danio rerio] | 0.0 |
| pfu_aug2.0_327.1_23864.t1 | gi|573906364|ref|XP_006640902.1| | PREDICTED: dehydrogenase/reductase SDR family member 11-like [Lepisosteus oculatus] | 0.0 |
| pfu_aug2.0_327.1_23864.t1 | gi|348505272|ref|XP_003440185.1| | PREDICTED: dehydrogenase/reductase SDR family member 11-like [Oreochromis niloticus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_327.1_23864.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_327.1_23864.t1 atggaacgctggagagggagggttgccttagtaacaggaggttccatgggaatcggcgaggccacagcaaagagattggt gtcacatggcatgaaagtcgtcgtctgtgcgcgtagttttgaaaagttagaggccctgtctaaagaataccagaatatac accctattaaatgtgatttaagggatagagacgacatcacccggatgttcaaggagatcaaggagacccatggagggata gacgtatgcgttaataacgcgggattggcattagagtcccccatcttagatggcgacccggacctatgggatgaaatgtg gaaggtaaatgtaagagccctgtgcctttgtactcaggagtccgtcaaatctatgcgagaacgtaatgtagatgatggtc atataataaacatcaatagtctctcaggtcataggtgtggaaaacaacatttttattcagctaccaagtttgccgtgaca tccctttcggaggggcttcgatgggaactgaatgctgttcaatctaggattcgagttacgagcatcagtccaggtcttgt ccatactaactttgctcacactctgatggggaaagatgccgccgaggacatgtacgctacacgatcgggtttggaggcgg atgacatcgccagaacagtagagactgtgttatcgtcaccaccgcacgttcagatgaatgaaatcatgatgaggcacatc gaacaagttgtgtga |
|
Protein
| Protein ID | pfu_aug2.0_327.1_23864.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_327.1_23864.t1 MERWRGRVALVTGGSMGIGEATAKRLVSHGMKVVVCARSFEKLEALSKEYQNIHPIKCDLRDRDDITRMFKEIKETHGGI DVCVNNAGLALESPILDGDPDLWDEMWKVNVRALCLCTQESVKSMRERNVDDGHIININSLSGHRCGKQHFYSATKFAVT SLSEGLRWELNAVQSRIRVTSISPGLVHTNFAHTLMGKDAAEDMYATRSGLEADDIARTVETVLSSPPHVQMNEIMMRHI EQVV |
|