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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_327.1_23874
Locus scaffold327.1 : 167510 ... 178355 : -
To GenomeBrowser scaffold327.1:167510..178355
Genes list of scaffold scaffold327.1
Synonym pfu_aug1.0_4688.1_37944

Manual annotation
Annotation by Blast2GO
Annotation GO
prolyl 4-hydroxylase alpha-1 subunit GO:0008152 GO:0009987 GO:0016705 GO:0043231 GO:0044444 GO:0044699 GO:0051213

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_327.1_23874.t1 3 1 P4Ha_N 24 158 1.6e-17 63.5 2.9e-20 8.7e-17 61.1
pfu_aug2.0_327.1_23874.t1 3 2 P4Ha_N 221 268 1.6e-17 63.5 0.64 1900.0 -1.4
pfu_aug2.0_327.1_23874.t1 3 3 P4Ha_N 315 340 1.6e-17 63.5 3.1 9300.0 -3.7

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_327.1_23874.t1 gi|752406595|ref|XP_011224755.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1 isoform X3 [Ailuropoda melanoleuca] 1.4013e-45
pfu_aug2.0_327.1_23874.t1 gi|543295175|ref|XP_005430084.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1 isoform X2 [Geospiza fortis] 5.04467e-44
pfu_aug2.0_327.1_23874.t1 gi|542177035|ref|XP_005495249.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1 isoform X1 [Zonotrichia albicollis] 6.02558e-44
pfu_aug2.0_327.1_23874.t1 gi|675423342|ref|XP_008925312.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1 isoform X1 [Manacus vitellinus] 7.00649e-44

Transcript
Transcript IDpfu_aug2.0_327.1_23874.t1
Definition-
>pfu_aug2.0_327.1_23874.t1
atgtggaaaacaacaacaaattcaattcatttcatgaaatatgagatattgaataaggaaaaaaaaantacgtctaccca
tcgcatggaagaggcactcagaaaagatgttacggagctgtcaaagaatctggaatcgtacatcgcaaaagaaagacaga
aactgacaactataaagagcgctgttcgaggcatgaagcagcttcacagagacttgattcctgttactgcagatgcccct
gggaatccgttatcttactttactttcacttcatcctttgtgaagcagtggaacacgatagaaggagctataaatgagtc
agatatacatgatggttttagagcaggtatgttaaattctgggtttaaatttcccaatcgtggcgacatgcttggactta
tggacgatatggtgaagtctcagcctgtattcaacttgaatgcatcagatatagccagtggttacttattgggaagagtg
accactcccctttctacaagggactgtttcgacatagccaagcgtgcctttgccaaatccatggaacgacttagtgtaga
ttggcttggagctgctatttcccgactagaaaattccccaattagagagcctgagactgtaaccgacttctacggagcca
agcagaatctcgatttacaaacactagaagagtcaagggaattcgctcaaaaaacgaaatacaaaaagaaaaagagcaaa
ttttatcgttgtttctatgctgaccacgaaaacccgtactatcgtctgcggcggattaaaatggaactgaaacacctgaa
gcccttgatagttatcctacatgacgtcatttatgatgacgacattcacgacatgaaagaggaggttctccataggatga
aaaggtctgtcgtaagattagacggtgcagagaaaactgtcaacgtggaatcaagaataagtattagcgcatatctagag
gagaatggaacaacagcgaggaggctcagcacgcgcatatcatctatgacccatataaacctatctccccaaaacgtgga
gggatacaaggtttcgaactacggtccagtcggtccgtttgatccacatgttgatttttggagtgacgaaaaaatggtta
aaaagaggtcgaccacaggcacaaatagactgctaacattgctatcatatttaaacaatgttgattatggtggcagcacg
gtatttccttatctgaaggtcaggatagaacctacaaagggatccttggttatttttataaatctagacgaggatggatc
tggaactaaaatgtcaacacatgcatcctgtcctgttgtttttggcaataagtggatagtggcgaaatatgtgcactaca
aggggcaaaacttggctgaactggaacggtttgccgtctccggtctggacgtgaagtga

Protein
Protein IDpfu_aug2.0_327.1_23874.t1
Definition-
>pfu_aug2.0_327.1_23874.t1
MWKTTTNSIHFMKYEILNKEKKXTSTHRMEEALRKDVTELSKNLESYIAKERQKLTTIKSAVRGMKQLHRDLIPVTADAP
GNPLSYFTFTSSFVKQWNTIEGAINESDIHDGFRAGMLNSGFKFPNRGDMLGLMDDMVKSQPVFNLNASDIASGYLLGRV
TTPLSTRDCFDIAKRAFAKSMERLSVDWLGAAISRLENSPIREPETVTDFYGAKQNLDLQTLEESREFAQKTKYKKKKSK
FYRCFYADHENPYYRLRRIKMELKHLKPLIVILHDVIYDDDIHDMKEEVLHRMKRSVVRLDGAEKTVNVESRISISAYLE
ENGTTARRLSTRISSMTHINLSPQNVEGYKVSNYGPVGPFDPHVDFWSDEKMVKKRSTTGTNRLLTLLSYLNNVDYGGST
VFPYLKVRIEPTKGSLVIFINLDEDGSGTKMSTHASCPVVFGNKWIVAKYVHYKGQNLAELERFAVSGLDVK

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