Gene
| Gene Model ID | pfu_aug2.0_327.1_23874 |
|---|---|
| Locus | scaffold327.1 : 167510 ... 178355 : - |
| To GenomeBrowser | scaffold327.1:167510..178355 |
| Genes list of scaffold | scaffold327.1 |
| Synonym | pfu_aug1.0_4688.1_37944 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| prolyl 4-hydroxylase alpha-1 subunit | GO:0008152 GO:0009987 GO:0016705 GO:0043231 GO:0044444 GO:0044699 GO:0051213 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_327.1_23874.t1 | 3 | 1 | P4Ha_N | 24 | 158 | 1.6e-17 | 63.5 | 2.9e-20 | 8.7e-17 | 61.1 |
| pfu_aug2.0_327.1_23874.t1 | 3 | 2 | P4Ha_N | 221 | 268 | 1.6e-17 | 63.5 | 0.64 | 1900.0 | -1.4 |
| pfu_aug2.0_327.1_23874.t1 | 3 | 3 | P4Ha_N | 315 | 340 | 1.6e-17 | 63.5 | 3.1 | 9300.0 | -3.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_327.1_23874.t1 | gi|752406595|ref|XP_011224755.1| | PREDICTED: prolyl 4-hydroxylase subunit alpha-1 isoform X3 [Ailuropoda melanoleuca] | 1.4013e-45 |
| pfu_aug2.0_327.1_23874.t1 | gi|543295175|ref|XP_005430084.1| | PREDICTED: prolyl 4-hydroxylase subunit alpha-1 isoform X2 [Geospiza fortis] | 5.04467e-44 |
| pfu_aug2.0_327.1_23874.t1 | gi|542177035|ref|XP_005495249.1| | PREDICTED: prolyl 4-hydroxylase subunit alpha-1 isoform X1 [Zonotrichia albicollis] | 6.02558e-44 |
| pfu_aug2.0_327.1_23874.t1 | gi|675423342|ref|XP_008925312.1| | PREDICTED: prolyl 4-hydroxylase subunit alpha-1 isoform X1 [Manacus vitellinus] | 7.00649e-44 |
Transcript
| Transcript ID | pfu_aug2.0_327.1_23874.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_327.1_23874.t1 atgtggaaaacaacaacaaattcaattcatttcatgaaatatgagatattgaataaggaaaaaaaaantacgtctaccca tcgcatggaagaggcactcagaaaagatgttacggagctgtcaaagaatctggaatcgtacatcgcaaaagaaagacaga aactgacaactataaagagcgctgttcgaggcatgaagcagcttcacagagacttgattcctgttactgcagatgcccct gggaatccgttatcttactttactttcacttcatcctttgtgaagcagtggaacacgatagaaggagctataaatgagtc agatatacatgatggttttagagcaggtatgttaaattctgggtttaaatttcccaatcgtggcgacatgcttggactta tggacgatatggtgaagtctcagcctgtattcaacttgaatgcatcagatatagccagtggttacttattgggaagagtg accactcccctttctacaagggactgtttcgacatagccaagcgtgcctttgccaaatccatggaacgacttagtgtaga ttggcttggagctgctatttcccgactagaaaattccccaattagagagcctgagactgtaaccgacttctacggagcca agcagaatctcgatttacaaacactagaagagtcaagggaattcgctcaaaaaacgaaatacaaaaagaaaaagagcaaa ttttatcgttgtttctatgctgaccacgaaaacccgtactatcgtctgcggcggattaaaatggaactgaaacacctgaa gcccttgatagttatcctacatgacgtcatttatgatgacgacattcacgacatgaaagaggaggttctccataggatga aaaggtctgtcgtaagattagacggtgcagagaaaactgtcaacgtggaatcaagaataagtattagcgcatatctagag gagaatggaacaacagcgaggaggctcagcacgcgcatatcatctatgacccatataaacctatctccccaaaacgtgga gggatacaaggtttcgaactacggtccagtcggtccgtttgatccacatgttgatttttggagtgacgaaaaaatggtta aaaagaggtcgaccacaggcacaaatagactgctaacattgctatcatatttaaacaatgttgattatggtggcagcacg gtatttccttatctgaaggtcaggatagaacctacaaagggatccttggttatttttataaatctagacgaggatggatc tggaactaaaatgtcaacacatgcatcctgtcctgttgtttttggcaataagtggatagtggcgaaatatgtgcactaca aggggcaaaacttggctgaactggaacggtttgccgtctccggtctggacgtgaagtga |
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Protein
| Protein ID | pfu_aug2.0_327.1_23874.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_327.1_23874.t1 MWKTTTNSIHFMKYEILNKEKKXTSTHRMEEALRKDVTELSKNLESYIAKERQKLTTIKSAVRGMKQLHRDLIPVTADAP GNPLSYFTFTSSFVKQWNTIEGAINESDIHDGFRAGMLNSGFKFPNRGDMLGLMDDMVKSQPVFNLNASDIASGYLLGRV TTPLSTRDCFDIAKRAFAKSMERLSVDWLGAAISRLENSPIREPETVTDFYGAKQNLDLQTLEESREFAQKTKYKKKKSK FYRCFYADHENPYYRLRRIKMELKHLKPLIVILHDVIYDDDIHDMKEEVLHRMKRSVVRLDGAEKTVNVESRISISAYLE ENGTTARRLSTRISSMTHINLSPQNVEGYKVSNYGPVGPFDPHVDFWSDEKMVKKRSTTGTNRLLTLLSYLNNVDYGGST VFPYLKVRIEPTKGSLVIFINLDEDGSGTKMSTHASCPVVFGNKWIVAKYVHYKGQNLAELERFAVSGLDVK |
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