Gene
| Gene Model ID | pfu_aug2.0_327.1_23878 |
|---|---|
| Locus | scaffold327.1 : 228715 ... 236919 : - |
| To GenomeBrowser | scaffold327.1:228715..236919 |
| Genes list of scaffold | scaffold327.1 |
| Synonym | NA |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| prolyl 4-hydroxylase subunit alpha-3 | GO:0005783 GO:0031545 GO:0043412 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_327.1_23878.t1 | 1 | 1 | P4Ha_N | 5 | 52 | 1.4e-07 | 31.3 | 9.3e-11 | 6.9e-07 | 29.1 |
| pfu_aug2.0_327.1_23878.t1 | 1 | 1 | 2OG-FeII_Oxy_3 | 269 | 359 | 1.6e-06 | 28.5 | 3.8e-10 | 2.8e-06 | 27.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_327.1_23878.t1 | gi|17541712|ref|NP_502317.1| | PHY-2 [Caenorhabditis elegans] | 0.0 |
| pfu_aug2.0_327.1_23878.t1 | gi|268536692|ref|XP_002633481.1| | C. briggsae CBR-PHY-2 protein [Caenorhabditis briggsae] | 0.0 |
| pfu_aug2.0_327.1_23878.t1 | gi|525028835|ref|XP_005061829.1| | PREDICTED: prolyl 4-hydroxylase subunit alpha-3 [Ficedula albicollis] | 9.94922e-44 |
| pfu_aug2.0_327.1_23878.t1 | gi|699692325|ref|XP_009889316.1| | PREDICTED: prolyl 4-hydroxylase subunit alpha-3 [Charadrius vociferus] | 9.94922e-44 |
Transcript
| Transcript ID | pfu_aug2.0_327.1_23878.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_327.1_23878.t1 atggagatcgtgagcccagagttatatgacaaagtaacagagaagaggagtgagcttcctatccaagaagatgtggaggg aataattgatggcatgacaagatcacaaggaatatttaatctgaaaaccagggaattggctaacggaatcattgctcatt ggaaatcaataccacttacagccattgactgttatactattgccaagcacatgtaccacaataacgtgccaaggttatca ctacaatggatggacatggcaatggagaagaccgagaatcagacaatgctggaaacagtcagcatggtcaaagacttcca gaatataacaacggacttcaatatggaactcttacaatcatccaagaagctgataaaaagattgtacgtaggagctgaga ttaggaggaatcttgcagaatacaacgcgttcgagaggctttgtagagagcaatatgaggtatatgacacaaagaaattg gaaatcatgagatgtttctatgccaaccattataatccttattacaaactcaggagactcaaaattgaggttctcaatga acaacccattatactggttttacatgatattacatatgatcgcgagattgaagccatgaagaatacggtgctacatagga tggaaaggtcagtggtaaggactggaaaagtcacaaaaccttcggacatcagaatcagtatcagtgcttacttgccaggc aatgacacactatcaagagctatagacagaaggttccaatccatatttgacttgactatacacgatgacttaatggaaga atacaagatatcaaattacggaacagcaggaatatttgatttgcatatagactattggcaagatcaaaagatggtaaaaa gtaggtctatatctcaaacaaacagactattcactctccttacatatttggaaaagccagagcttggtggaagaacagtt ttcccttatctggacatatcagtagagccaacaaagggatcactactgctattccaaaatctggctcccagtgggtatgg tgaccggagggcattccatggttcctgtcctgtagttctgggcagtaaatggatctcatcaaaatacattcacaggtttg gtcaagatctcggtgtgttaaagaggctcgtcaacaacgctttatga |
|
Protein
| Protein ID | pfu_aug2.0_327.1_23878.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_327.1_23878.t1 MEIVSPELYDKVTEKRSELPIQEDVEGIIDGMTRSQGIFNLKTRELANGIIAHWKSIPLTAIDCYTIAKHMYHNNVPRLS LQWMDMAMEKTENQTMLETVSMVKDFQNITTDFNMELLQSSKKLIKRLYVGAEIRRNLAEYNAFERLCREQYEVYDTKKL EIMRCFYANHYNPYYKLRRLKIEVLNEQPIILVLHDITYDREIEAMKNTVLHRMERSVVRTGKVTKPSDIRISISAYLPG NDTLSRAIDRRFQSIFDLTIHDDLMEEYKISNYGTAGIFDLHIDYWQDQKMVKSRSISQTNRLFTLLTYLEKPELGGRTV FPYLDISVEPTKGSLLLFQNLAPSGYGDRRAFHGSCPVVLGSKWISSKYIHRFGQDLGVLKRLVNNAL |
|