Gene
| Gene Model ID | pfu_aug2.0_327.1_23879 |
|---|---|
| Locus | scaffold327.1 : 246070 ... 264760 : + |
| To GenomeBrowser | scaffold327.1:246070..264760 |
| Genes list of scaffold | scaffold327.1 |
| Synonym | pfu_aug1.0_10876.1_53610 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| coatomer subunit beta -like | GO:0005198 GO:0006886 GO:0006891 GO:0030126 GO:0030903 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_327.1_23879.t1 | 6 | 1 | WD40 | 13 | 49 | 0.0 | 156.0 | 8.5e-13 | 6.3e-09 | 35.3 |
| pfu_aug2.0_327.1_23879.t1 | 6 | 2 | WD40 | 54 | 92 | 0.0 | 156.0 | 5.3e-14 | 3.9e-10 | 39.2 |
| pfu_aug2.0_327.1_23879.t1 | 6 | 3 | WD40 | 99 | 137 | 0.0 | 156.0 | 2.8e-12 | 2.1e-08 | 33.7 |
| pfu_aug2.0_327.1_23879.t1 | 6 | 4 | WD40 | 142 | 179 | 0.0 | 156.0 | 1.4e-15 | 1.0e-11 | 44.2 |
| pfu_aug2.0_327.1_23879.t1 | 2 | 1 | Coatomer_WDAD | 241 | 453 | 0.0 | 501.7 | 0.0 | 0.0 | 248.1 |
| pfu_aug2.0_327.1_23879.t1 | 6 | 5 | WD40 | 280 | 294 | 0.0 | 156.0 | 0.39 | 2900.0 | -1.6 |
| pfu_aug2.0_327.1_23879.t1 | 6 | 6 | WD40 | 355 | 367 | 0.0 | 156.0 | 1.5 | 11000.0 | -3.5 |
| pfu_aug2.0_327.1_23879.t1 | 2 | 2 | Coatomer_WDAD | 457 | 660 | 0.0 | 501.7 | 0.0 | 0.0 | 252.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_327.1_23879.t1 | gi|676467231|ref|XP_009057822.1| | hypothetical protein LOTGIDRAFT_182444 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_327.1_23879.t1 | gi|524886190|ref|XP_005099692.1| | PREDICTED: coatomer subunit beta'-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_327.1_23879.t1 | gi|617441345|ref|XP_007565203.1| | PREDICTED: coatomer subunit beta' isoform X2 [Poecilia formosa] | 0.0 |
| pfu_aug2.0_327.1_23879.t1 | gi|432915831|ref|XP_004079208.1| | PREDICTED: coatomer subunit beta' [Oryzias latipes] | 0.0 |
| pfu_aug2.0_327.1_23879.t1 | gi|73853866|ref|NP_001027518.1| | coatomer subunit beta' [Xenopus (Silurana) tropicalis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_327.1_23879.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_327.1_23879.t1 atgcagattcgtatctttaactacaacacgttagagagagtccatcagtatgaggcccactcggattatatacgctccat cgccgtgcaccccacccaacccttcattctcagcagcagtgacgatatgctgatcaagttatgggactgggacaagaaat ggacatgtacccaggtgtttgagggccacacccattatgtgatgcagattgtcataaatccaaaagacaataacacattc gctagtgcttcactagatcgcactgtcaaggtttggcagctaggatcccccactcctaacttcacattagagggacatga aaagggagttaactgtgtagattactactcagggggagataaaccatacctgatttcaggggctgatgacagactcataa agatatgggattatcagaacaagacgtgtgtacagacattggagggacatgcacagaatatatcatctgtctctttccat ccagaactccctattataatgacaggatcagaggatggtactgtgagaatctggcatgccaacacatacagactggaaag tacgttaaactacggcctggagagagtatggtgtatagccagtcagaaaggatctaataacgtggccctagggtatgatg agggcagtattattataaagcttggacgtgaagagccagcaatatccatggacagtagcggaaaaataatctgggcaaaa cattcggagatccagcaagccaacattaaggcaatcggtgatcaagacataaaagacggagagagactgccgttagctgt taaagacatgggaagctgtgaagtctacccacaaactgtagctcataatcctaatggaaggtttgtagtggtgtgtggag atggggagtacattatatacacagccatggcactcagaaacaagagttttggatccgcccaggaatttgtgtggagtaac gactcgtcagtgtacgccatcagagagtcatccagcatggtcaaaatattcaaaaacttcaaagaacagaaatcatttaa gccagattttggtgcagaaggtatttacggaggtcacatgttaggagtgagatccgtcagcgggttggcgttttacgact gggactcgactgatctgatcagaaggattgaaatcacacctaaaaatgtcatatggagtgagaatggtgacttggtgtgc ataacaacagaggagtcgttcttcatcctgaagtacagtcccgaggcagtggaaaaagcccgagaaaacaaagaggaaat gaccgaagatggagtcgaggaagcgtttgacgtggttggtgagattgacgagacagtgaagacaggaatctgggtctcat attatttcaggaccatgtacttgttgggatacataccaaaggataatcgtttataccttggtgataaggaactgaacgtc gttagcttctccttgcttctgtctgtactcgaatatcaaacggttgtcatgaggcgggacttcgatacagctgataaagt tttacccacaattccaagagagcacagaactagagttgctcatttcctagagaaacaaggttttaagtcacaagcattgg ctgtaacatgtgacccagaacataagtttgagctagctctacagcttggagatcttaaaacttgttatcaaatagccaaa gaaatagagtcagagcacaaatggaagcagttagcagagctggccattagtagctgtgagtttggtttggctcaggagtg cctacaccaggctaacgactttgggggtctgctgcttcttgcaagttctgctggtaacgcacagatggtggctaagcttg gagacacagcacagaagtcaggacagaataacgtggcgttcctctcatattttacactcggcaggttggaggaatgctta gaagtattaatcagcacaaaccgtctaccagaagctgcgttttttgctcggacgtatttacctagtcaagtatcaagagt tgttggtttgtggagagaggagcttggtaaggtgaacaagaagacggcaggatctctagccgacccagaggagtacgaga atctcttcccgaactggcgggacacactaaaaaccgaacagtacctaaagccacaaagacaaaaggacatacctgccagt aaataccctcaagtccctccaaaccatgagagagatgcactatcagacatgaggaatgcggaggaacagggagcgtttag ttatattccttcctcaggagagttagaggacacagaggattttgaggatgctccatcaacgtcagaacaaactaaacagg aatcacctcctcctgcagcgtcagccaaactccccacaccccctccccccgccccatcacaacaaccctccaacctcagc aaggaggatatggccgacatagaggctgaattagaactagatatagaaaatatgaaaatagacgaagatattgatactac ggatgtgaatttagatgaagatttgttagaggactga |
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Protein
| Protein ID | pfu_aug2.0_327.1_23879.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_327.1_23879.t1 MQIRIFNYNTLERVHQYEAHSDYIRSIAVHPTQPFILSSSDDMLIKLWDWDKKWTCTQVFEGHTHYVMQIVINPKDNNTF ASASLDRTVKVWQLGSPTPNFTLEGHEKGVNCVDYYSGGDKPYLISGADDRLIKIWDYQNKTCVQTLEGHAQNISSVSFH PELPIIMTGSEDGTVRIWHANTYRLESTLNYGLERVWCIASQKGSNNVALGYDEGSIIIKLGREEPAISMDSSGKIIWAK HSEIQQANIKAIGDQDIKDGERLPLAVKDMGSCEVYPQTVAHNPNGRFVVVCGDGEYIIYTAMALRNKSFGSAQEFVWSN DSSVYAIRESSSMVKIFKNFKEQKSFKPDFGAEGIYGGHMLGVRSVSGLAFYDWDSTDLIRRIEITPKNVIWSENGDLVC ITTEESFFILKYSPEAVEKARENKEEMTEDGVEEAFDVVGEIDETVKTGIWVSYYFRTMYLLGYIPKDNRLYLGDKELNV VSFSLLLSVLEYQTVVMRRDFDTADKVLPTIPREHRTRVAHFLEKQGFKSQALAVTCDPEHKFELALQLGDLKTCYQIAK EIESEHKWKQLAELAISSCEFGLAQECLHQANDFGGLLLLASSAGNAQMVAKLGDTAQKSGQNNVAFLSYFTLGRLEECL EVLISTNRLPEAAFFARTYLPSQVSRVVGLWREELGKVNKKTAGSLADPEEYENLFPNWRDTLKTEQYLKPQRQKDIPAS KYPQVPPNHERDALSDMRNAEEQGAFSYIPSSGELEDTEDFEDAPSTSEQTKQESPPPAASAKLPTPPPPAPSQQPSNLS KEDMADIEAELELDIENMKIDEDIDTTDVNLDEDLLED |
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