Gene
| Gene Model ID | pfu_aug2.0_329.1_30624 |
|---|---|
| Locus | scaffold329.1 : 41876 ... 80915 : + |
| To GenomeBrowser | scaffold329.1:41876..80915 |
| Genes list of scaffold | scaffold329.1 |
| Synonym | pfu_aug1.0_22902.1_69523 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_329.1_30624.t1 | 3 | 1 | PAS | 244 | 302 | 2.3e-10 | 40.2 | 1.8e-08 | 5.2e-05 | 22.9 |
| pfu_aug2.0_329.1_30624.t1 | 2 | 1 | PAS_4 | 245 | 299 | 3.4e-06 | 27.0 | 0.00013 | 0.38 | 10.7 |
| pfu_aug2.0_329.1_30624.t1 | 2 | 1 | PAS_9 | 252 | 327 | 1.6e-09 | 38.0 | 1.4e-06 | 0.004 | 17.4 |
| pfu_aug2.0_329.1_30624.t1 | 2 | 1 | PAS_3 | 262 | 302 | 2.5e-19 | 69.1 | 0.00013 | 0.39 | 10.8 |
| pfu_aug2.0_329.1_30624.t1 | 2 | 1 | PAS_11 | 278 | 299 | 1.9e-20 | 72.8 | 0.013 | 38.0 | 4.2 |
| pfu_aug2.0_329.1_30624.t1 | 2 | 2 | PAS_11 | 392 | 496 | 1.9e-20 | 72.8 | 1.3e-21 | 3.9e-18 | 65.4 |
| pfu_aug2.0_329.1_30624.t1 | 2 | 2 | PAS_9 | 398 | 487 | 1.6e-09 | 38.0 | 1.3e-06 | 0.0039 | 17.5 |
| pfu_aug2.0_329.1_30624.t1 | 2 | 2 | PAS_4 | 399 | 495 | 3.4e-06 | 27.0 | 1.4e-05 | 0.042 | 13.8 |
| pfu_aug2.0_329.1_30624.t1 | 3 | 2 | PAS | 402 | 488 | 2.3e-10 | 40.2 | 1.1e-05 | 0.033 | 13.9 |
| pfu_aug2.0_329.1_30624.t1 | 2 | 2 | PAS_3 | 404 | 488 | 2.5e-19 | 69.1 | 1.2e-18 | 3.5e-15 | 55.8 |
| pfu_aug2.0_329.1_30624.t1 | 3 | 3 | PAS | 1113 | 1139 | 2.3e-10 | 40.2 | 4.5 | 13000.0 | -4.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_329.1_30624.t1 | gi|390358832|ref|XP_003729347.1| | PREDICTED: uncharacterized protein LOC100891430 isoform X3 [Strongylocentrotus purpuratus] | 0.0 |
| pfu_aug2.0_329.1_30624.t1 | gi|676451775|ref|XP_009052816.1| | hypothetical protein LOTGIDRAFT_159865 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_329.1_30624.t1 | gi|524899065|ref|XP_005105973.1| | PREDICTED: uncharacterized protein LOC101845948 [Aplysia californica] | 2.8026e-45 |
| pfu_aug2.0_329.1_30624.t1 | gi|727003739|ref|XP_010392003.1| | PREDICTED: endothelial PAS domain-containing protein 1 isoform X2 [Corvus cornix cornix] | 2.99878e-43 |
| pfu_aug2.0_329.1_30624.t1 | gi|148227427|ref|NP_001085718.1| | endothelial PAS domain protein 1 [Xenopus laevis] | 7.00649e-43 |
Transcript
| Transcript ID | pfu_aug2.0_329.1_30624.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_329.1_30624.t1 atgaaacatcagactcagtggttccagataaagacggacgtgaaaaatgtcagggttcctagctctttctccttgcgaca gcaagggcacggggaagaccaaaaaccacatatggagaagaacggtggaaaaagaaataaatacagaaggatgggtaagc tggaatacaacaaaggtcacagtagcagcaaggggcagaaagaagtggaaagatatgtgccttctggcgtgtgctcattg atcagtggcgtagctataccatatatagttaagtcccttcgtttgatgaggatggacgaggaaagtgaaactatggaagt aatagaagagttctctcccctgaaaaactcaaccaagtgtaaccgcaaactcacaagggctgaaaagtctaagcttgcag caaagagaagacgagacaatgagggcgtggagcttgatagactgatagagttactgcccttctcctcggagtctttgaaa agaatggacaaaaattccatgatggatttgttattggattatatgaagatgaaacagtatgttcagaaagagatggctgc cctgtcactgcaggacaaggatcaatcgggggagaccacaaaacaggtgacaacgcccaccaacaatcaggtggccctac ccgctggcaaacagcttgccctgcccagtaatggatgctgtagaaatattgccatgatcaacggtgtggaggtagaggaa agcactctgatgttagaggccatgaacggattcttgatattactggataagaaaaagagagttatgtatgcgtctgacgg cattttaacacatctgggcattgatcagatatatgtgcttggcaaatacatcaaagactttatacaccctgatgacatag ctgagttaaggaagcagtttaatatgaagccatgtgctgatcaggaaaactgtaactgtacacctatagttagtggcaag agaaaagaaggctcaagttatcaattttgtacgaatttctgtgaaacggggtactgggcatcgcaccacatttgggaaat gctggtacagtggtcagggcgtctaaagatgcgatcgtccagccagcccggggggtatgccgtggacggattgatatgta tctgccgcccaatgcagaccaattctatactggagatcaacatggatggcaacatgttcatgagcagacacgatctggga atgcgatttacattctgtgatccaagaattgtgacgttactaggatacgaaccccaggaattgttgggaaagactgcata cactttccataatcctatagatgctccaaaagtcagcgactgtcattctaaattgattgtgaagggagcctctgtcagta aatattacagattcatcggcaaaaactgtgactgggtgtggatgcaaactcgtgctaccattatatacaacactagtaat gtgccccagtatattgtctgcatgaattatatcataagtgaggaagaaggacaaagatacttgatgatggaaagagaaga caagataaagaatcagttaatgggtgtggagacctgccatgggggagaggatcaccatagtgatagtggctatggtagta gtaccagcccctattccagtattcaccactccccctgctctgaccatggtatggaagtggcaaatacgatgaatggaact ctgggaaatgaggaagaagtggctcagctactgaaagaattcagtcagcaaaagaaagatgccaagaaatcgaaaatgac gataaaaagcactggaaaagatggtcagagaggaacgcaaccaaatgcattaaaaggacagcacaatgggtttaatcaga ggaaaggaagtgcacatgctctactctgttccattcctaatccattctcaagcaatcagcaaaatgcaaccatgaggaga aatgcttctacgggtgatatcaagcgattggcacataaagctgcacccgtgggattgcagcaaaacagagtttcctcctt ccagcagttgtctggccttagcaacgtggctgaattgaaccctctatattgctcacaacaaaatggcagttcaaatgctc taagtccagaaatgaacactttatctcctcaaactataagtgatgattccagtgagccaatggacatgatatctcctgaa ccgtttcagaatgcgatgatctctgatgtgaacttcatggcgcagacttgccaatctccggagagtatttctcaggactc tgtaccgtctggtggactgatgaacgtacaagttgggttactcaacacgatggacctggacaccattactgatgatctgc ctaaagaaataacagatttctgcattgaatattgtgaatcacttgttgaaaaccaagcacaacaaataatgtcatcactt ggccaaacagatttgtccgaatttgaccagatttgcagccagaaaggctttgccgataagaattttccagaccaacaatt cagtaacacacagcttccatctcaaggcacttttcctgtatcgtgtccaaattcatttccatctggaagccaagaggcca ctgtttcaagcccaactcaacagacaagcagtttaagagaaggcagtaacactggtctgagtagcttgccctcaaactac cctcttgtacctggcaccactttagttgctccagtgatatcgtcaagcaccttgcagaatatgaattctcctcagatttc atctcagaacacatctcaacagcagatgggatgctcctggcctaactcaccattaggcttaccaggacaatctgttcaag ataattcaatatcgtcatcacccatgatgagccagcctagcccaggctcctgctattcctacccacagcccagcccacag agcatcagtgccctgtccccggccagttcggctacgtcaaccttctctccgagaccgtcgcctcaatcaccaggggttta tccaccatcacctggtaacggttttatgtcacattccagctctagggacacatcaatgaactttctacccagatctcaac agtgtaatcaaactttctcatgtaacgactgcatgtcacctccatcaatgacagcgtcatcatataatggaaggaaaaat cagttaatgaggacatattcggcaccgaccacttctacgttaagtagtgcaaataacgatagggtcaatatgcctgtgaa ttcaaattgtttcttgactgctaattctcaaggtactcgaatgtccgagcttgagaaaatgttgcgtggttattcgagaa ataacgacgggttacctgtcacacagacattgtgcggtgaaaaagaggcaaataattgcagccattctaagcttttacag cagatgttgacaggacagctttccggagaagtatatcatgcgatggaaaacaaacgtaaagtgaacgttcttcataagcc tctacactag |
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Protein
| Protein ID | pfu_aug2.0_329.1_30624.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_329.1_30624.t1 MKHQTQWFQIKTDVKNVRVPSSFSLRQQGHGEDQKPHMEKNGGKRNKYRRMGKLEYNKGHSSSKGQKEVERYVPSGVCSL ISGVAIPYIVKSLRLMRMDEESETMEVIEEFSPLKNSTKCNRKLTRAEKSKLAAKRRRDNEGVELDRLIELLPFSSESLK RMDKNSMMDLLLDYMKMKQYVQKEMAALSLQDKDQSGETTKQVTTPTNNQVALPAGKQLALPSNGCCRNIAMINGVEVEE STLMLEAMNGFLILLDKKKRVMYASDGILTHLGIDQIYVLGKYIKDFIHPDDIAELRKQFNMKPCADQENCNCTPIVSGK RKEGSSYQFCTNFCETGYWASHHIWEMLVQWSGRLKMRSSSQPGGYAVDGLICICRPMQTNSILEINMDGNMFMSRHDLG MRFTFCDPRIVTLLGYEPQELLGKTAYTFHNPIDAPKVSDCHSKLIVKGASVSKYYRFIGKNCDWVWMQTRATIIYNTSN VPQYIVCMNYIISEEEGQRYLMMEREDKIKNQLMGVETCHGGEDHHSDSGYGSSTSPYSSIHHSPCSDHGMEVANTMNGT LGNEEEVAQLLKEFSQQKKDAKKSKMTIKSTGKDGQRGTQPNALKGQHNGFNQRKGSAHALLCSIPNPFSSNQQNATMRR NASTGDIKRLAHKAAPVGLQQNRVSSFQQLSGLSNVAELNPLYCSQQNGSSNALSPEMNTLSPQTISDDSSEPMDMISPE PFQNAMISDVNFMAQTCQSPESISQDSVPSGGLMNVQVGLLNTMDLDTITDDLPKEITDFCIEYCESLVENQAQQIMSSL GQTDLSEFDQICSQKGFADKNFPDQQFSNTQLPSQGTFPVSCPNSFPSGSQEATVSSPTQQTSSLREGSNTGLSSLPSNY PLVPGTTLVAPVISSSTLQNMNSPQISSQNTSQQQMGCSWPNSPLGLPGQSVQDNSISSSPMMSQPSPGSCYSYPQPSPQ SISALSPASSATSTFSPRPSPQSPGVYPPSPGNGFMSHSSSRDTSMNFLPRSQQCNQTFSCNDCMSPPSMTASSYNGRKN QLMRTYSAPTTSTLSSANNDRVNMPVNSNCFLTANSQGTRMSELEKMLRGYSRNNDGLPVTQTLCGEKEANNCSHSKLLQ QMLTGQLSGEVYHAMENKRKVNVLHKPLH |
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