Gene
| Gene Model ID | pfu_aug2.0_33.1_10135 |
|---|---|
| Locus | scaffold33.1 : 95446 ... 106699 : + |
| To GenomeBrowser | scaffold33.1:95446..106699 |
| Genes list of scaffold | scaffold33.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_33.1_10135.t1 | 6 | 1 | WD40 | 13 | 47 | 1.1e-38 | 129.7 | 2.4e-05 | 0.071 | 13.0 |
| pfu_aug2.0_33.1_10135.t1 | 6 | 2 | WD40 | 57 | 88 | 1.1e-38 | 129.7 | 7.4e-08 | 0.00022 | 20.9 |
| pfu_aug2.0_33.1_10135.t1 | 3 | 1 | Nup160 | 76 | 88 | 1.0e-07 | 30.5 | 0.15 | 450.0 | -1.4 |
| pfu_aug2.0_33.1_10135.t1 | 6 | 3 | WD40 | 96 | 131 | 1.1e-38 | 129.7 | 9.0e-12 | 2.7e-08 | 33.3 |
| pfu_aug2.0_33.1_10135.t1 | 3 | 2 | Nup160 | 108 | 140 | 1.0e-07 | 30.5 | 1.5e-07 | 0.00046 | 18.4 |
| pfu_aug2.0_33.1_10135.t1 | 6 | 4 | WD40 | 135 | 173 | 1.1e-38 | 129.7 | 3.4e-07 | 0.001 | 18.8 |
| pfu_aug2.0_33.1_10135.t1 | 6 | 5 | WD40 | 192 | 206 | 1.1e-38 | 129.7 | 0.065 | 190.0 | 2.1 |
| pfu_aug2.0_33.1_10135.t1 | 6 | 6 | WD40 | 226 | 264 | 1.1e-38 | 129.7 | 3.5e-13 | 1.0e-09 | 37.8 |
| pfu_aug2.0_33.1_10135.t1 | 3 | 3 | Nup160 | 247 | 292 | 1.0e-07 | 30.5 | 3.7e-05 | 0.11 | 10.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_33.1_10135.t1 | gi|676425568|ref|XP_009044357.1| | hypothetical protein LOTGIDRAFT_156088 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_33.1_10135.t1 | gi|524911114|ref|XP_005110426.1| | PREDICTED: WD repeat-containing protein 31-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_33.1_10135.t1 | gi|585659664|ref|XP_006816235.1| | PREDICTED: WD repeat-containing protein 31-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_33.1_10135.t1 | gi|260802871|ref|XP_002596315.1| | hypothetical protein BRAFLDRAFT_225597 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_33.1_10135.t1 | gi|564258855|ref|XP_006268356.1| | PREDICTED: WD repeat-containing protein 31 [Alligator mississippiensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_33.1_10135.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_33.1_10135.t1 atgtacgctcagggatcgggggctgtaaatggccccgtacaacacagccccatacatactgatgctgtagtcagtctgag taaggtacagcctggaatctgtctgtctgggagtaaagacaagaatgttgtattatatgactaccagagtaagaaaatag aggacaggtggacaggtcatgagagagaaattactaaagtcaaatatggtgctatatgtcagggtatattcagtgcttca cgagacaagtcagtcaaactttggagacgaggaaatgctgatgccgtaagggaatatctaggacacgaccttgtggtgtc tgcccttgaccttaaccaagataacagtagattatgtacaggatccagggataataccgtaaggttgtgggacgtagaaa cgggacagtgcctcctacagaataatatacacagaaatctggtgacagatgtaaagtttgtaccagagtccaatatgatt gtacagacaggcgaggataaagaagtcaggatttatgacacccgcacgttacaggtgacacataactttatacgtaagca gtatatacagatgtgttgtgacgttagtcgtgatggtgtgcactgtttgacgtgtagtaatgggttcgggggaaatggat gtgaagctacgctgtgggacttgagacagaagtgtatagtacaggagtaccgaggtcatagtgaggcagtagaatcctgt atgtttttaccatttacaagtccagacctaatcgctacttcctctagagactgtagtgtcaggatctgggataaaaatac taaagaatgtatagcatcgtgtgtggtcagtggttcagggcctttgtcttctatcatatgttatgaggatggcaccatgt gtgtcggcagtttcaatctgggtatactacaaatgaagttttccctatccaatcagacgcttcaacacatagcctcattt tga |
|
Protein
| Protein ID | pfu_aug2.0_33.1_10135.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_33.1_10135.t1 MYAQGSGAVNGPVQHSPIHTDAVVSLSKVQPGICLSGSKDKNVVLYDYQSKKIEDRWTGHEREITKVKYGAICQGIFSAS RDKSVKLWRRGNADAVREYLGHDLVVSALDLNQDNSRLCTGSRDNTVRLWDVETGQCLLQNNIHRNLVTDVKFVPESNMI VQTGEDKEVRIYDTRTLQVTHNFIRKQYIQMCCDVSRDGVHCLTCSNGFGGNGCEATLWDLRQKCIVQEYRGHSEAVESC MFLPFTSPDLIATSSRDCSVRIWDKNTKECIASCVVSGSGPLSSIICYEDGTMCVGSFNLGILQMKFSLSNQTLQHIASF |
|