Gene
| Gene Model ID | pfu_aug2.0_33.1_10145 |
|---|---|
| Locus | scaffold33.1 : 485045 ... 494735 : - |
| To GenomeBrowser | scaffold33.1:485045..494735 |
| Genes list of scaffold | scaffold33.1 |
| Synonym | pfu_aug1.0_538.1_36570 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| nhp2-like protein 1 | GO:0005681 GO:0005730 GO:0005840 GO:0006397 GO:0008270 GO:0008380 GO:0030515 GO:0042254 GO:0044822 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_33.1_10145.t1 | 1 | 1 | Ribosomal_L7Ae | 21 | 110 | 4.9e-27 | 93.2 | 2.0e-30 | 6.1e-27 | 92.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_33.1_10145.t1 | gi|147906322|ref|NP_001080724.1| | NHP2 non-histone chromosome protein 2-like 1 [Xenopus laevis] | 0.0 |
| pfu_aug2.0_33.1_10145.t1 | gi|45360641|ref|NP_988994.1| | NHP2-like protein 1 [Xenopus (Silurana) tropicalis] | 0.0 |
| pfu_aug2.0_33.1_10145.t1 | gi|334349567|ref|XP_001378787.2| | PREDICTED: NHP2-like protein 1 [Monodelphis domestica] | 0.0 |
| pfu_aug2.0_33.1_10145.t1 | gi|345319674|ref|XP_001507848.2| | PREDICTED: NHP2-like protein 1, partial [Ornithorhynchus anatinus] | 0.0 |
| pfu_aug2.0_33.1_10145.t1 | gi|147903409|ref|NP_001088399.1| | NHP2-like protein 1 [Xenopus laevis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_33.1_10145.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_33.1_10145.t1 atggttgatgcggtaaaccccaaagcttatcccctggctacagatcaacttacccaggacattctaaatatagttcagca ggcagccaatcataaacagctgaaaaaaggagccaatgaagctaccaagaccctgaacagaggaataagtgagtttatag tgatggcagctgatgccgagccgttagagattctactccatctacctctactttgtgaagacaagaatgttccatatgtt tttgtcaaaagcaaacaagcacttggtcgtgcatgtggagtatctcgaccagttattgcgtgctctgtgacaatgaacga gggttcccagttaaagccccaaatacagaccatgcagcaaaacattgagaaactcctcatttaa |
|
Protein
| Protein ID | pfu_aug2.0_33.1_10145.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_33.1_10145.t1 MVDAVNPKAYPLATDQLTQDILNIVQQAANHKQLKKGANEATKTLNRGISEFIVMAADAEPLEILLHLPLLCEDKNVPYV FVKSKQALGRACGVSRPVIACSVTMNEGSQLKPQIQTMQQNIEKLLI |
|