Gene
| Gene Model ID | pfu_aug2.0_33.1_10149 |
|---|---|
| Locus | scaffold33.1 : 553525 ... 582913 : - |
| To GenomeBrowser | scaffold33.1:553525..582913 |
| Genes list of scaffold | scaffold33.1 |
| Synonym | pfu_aug1.0_1298.1_29661 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_33.1_10149.t1 | 6 | 1 | Arylesterase | 7 | 33 | 9.4e-08 | 31.9 | 0.25 | 250.0 | 1.7 |
| pfu_aug2.0_33.1_10149.t1 | 5 | 1 | SGL | 61 | 95 | 5.0e-06 | 26.0 | 1.8 | 1800.0 | -2.0 |
| pfu_aug2.0_33.1_10149.t1 | 8 | 1 | Ldl_recept_b | 98 | 106 | 1.1e-14 | 54.3 | 1.1 | 1100.0 | -0.1 |
| pfu_aug2.0_33.1_10149.t1 | 4 | 1 | NHL | 98 | 105 | 2.2e-06 | 27.3 | 1.3 | 1300.0 | -0.4 |
| pfu_aug2.0_33.1_10149.t1 | 8 | 2 | Ldl_recept_b | 109 | 149 | 1.1e-14 | 54.3 | 4.4e-10 | 4.3e-07 | 30.1 |
| pfu_aug2.0_33.1_10149.t1 | 5 | 2 | SGL | 123 | 174 | 5.0e-06 | 26.0 | 3.4e-06 | 0.0033 | 16.8 |
| pfu_aug2.0_33.1_10149.t1 | 6 | 2 | Arylesterase | 130 | 165 | 9.4e-08 | 31.9 | 4.1e-05 | 0.041 | 13.8 |
| pfu_aug2.0_33.1_10149.t1 | 4 | 2 | NHL | 139 | 166 | 2.2e-06 | 27.3 | 0.00032 | 0.32 | 11.0 |
| pfu_aug2.0_33.1_10149.t1 | 8 | 3 | Ldl_recept_b | 168 | 193 | 1.1e-14 | 54.3 | 1.8 | 1800.0 | -0.7 |
| pfu_aug2.0_33.1_10149.t1 | 3 | 1 | GCC2_GCC3 | 219 | 235 | 2.0e-06 | 27.2 | 4.1 | 4100.0 | -2.6 |
| pfu_aug2.0_33.1_10149.t1 | 6 | 3 | Arylesterase | 273 | 297 | 9.4e-08 | 31.9 | 0.026 | 26.0 | 4.8 |
| pfu_aug2.0_33.1_10149.t1 | 5 | 3 | SGL | 275 | 323 | 5.0e-06 | 26.0 | 0.73 | 720.0 | -0.7 |
| pfu_aug2.0_33.1_10149.t1 | 8 | 4 | Ldl_recept_b | 283 | 322 | 1.1e-14 | 54.3 | 0.017 | 16.0 | 5.8 |
| pfu_aug2.0_33.1_10149.t1 | 5 | 4 | SGL | 327 | 384 | 5.0e-06 | 26.0 | 0.031 | 31.0 | 3.8 |
| pfu_aug2.0_33.1_10149.t1 | 6 | 4 | Arylesterase | 356 | 395 | 9.4e-08 | 31.9 | 0.081 | 81.0 | 3.3 |
| pfu_aug2.0_33.1_10149.t1 | 8 | 5 | Ldl_recept_b | 380 | 415 | 1.1e-14 | 54.3 | 0.00065 | 0.64 | 10.3 |
| pfu_aug2.0_33.1_10149.t1 | 5 | 5 | SGL | 402 | 429 | 5.0e-06 | 26.0 | 3.0 | 3000.0 | -2.7 |
| pfu_aug2.0_33.1_10149.t1 | 4 | 3 | NHL | 410 | 429 | 2.2e-06 | 27.3 | 0.00061 | 0.6 | 10.1 |
| pfu_aug2.0_33.1_10149.t1 | 8 | 6 | Ldl_recept_b | 419 | 452 | 1.1e-14 | 54.3 | 0.016 | 16.0 | 5.9 |
| pfu_aug2.0_33.1_10149.t1 | 4 | 4 | NHL | 518 | 527 | 2.2e-06 | 27.3 | 8.7 | 8600.0 | -3.0 |
| pfu_aug2.0_33.1_10149.t1 | 6 | 5 | Arylesterase | 589 | 598 | 9.4e-08 | 31.9 | 8.6 | 8500.0 | -3.2 |
| pfu_aug2.0_33.1_10149.t1 | 8 | 7 | Ldl_recept_b | 643 | 652 | 1.1e-14 | 54.3 | 3.3 | 3200.0 | -1.5 |
| pfu_aug2.0_33.1_10149.t1 | 8 | 8 | Ldl_recept_b | 656 | 668 | 1.1e-14 | 54.3 | 0.38 | 380.0 | 1.5 |
| pfu_aug2.0_33.1_10149.t1 | 6 | 6 | Arylesterase | 721 | 752 | 9.4e-08 | 31.9 | 6.0 | 6000.0 | -2.7 |
| pfu_aug2.0_33.1_10149.t1 | 3 | 2 | GCC2_GCC3 | 947 | 957 | 2.0e-06 | 27.2 | 1.3 | 1300.0 | -1.0 |
| pfu_aug2.0_33.1_10149.t1 | 3 | 3 | GCC2_GCC3 | 963 | 1001 | 2.0e-06 | 27.2 | 2.0e-09 | 2.0e-06 | 27.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_33.1_10149.t1 | gi|573910934|ref|XP_006643185.1| | PREDICTED: low-density lipoprotein receptor-related protein 4-like [Lepisosteus oculatus] | 1.0e-35 |
Transcript
| Transcript ID | pfu_aug2.0_33.1_10149.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_33.1_10149.t1 atggagaaaggaggtgtttactggactctgttattgatattggttatagagctctgtaacgggcaagatgtttacttctc aacatcaacaaagataaagaaacggaatacaaatactggaaatgaagtggacattgtatccaagtctgacagtcggttcc ttggtttggcggcacatttgggggactctaagctgtactatgttgacgtggccgacgccaccctggggatatacagaaag aatttagacggcacaggagcggaggaaaggattgttcaatacccccatatgagcccagtgggccttgctgtagattgggt gtttaaccatctgtattggacagaccctgtgtatcaggcagtaatgatgtctaaccttgatggatcaggtcgtgttgcct tggtaacaaaaggactaagcatacctagaggaatcgctgtggatccaaaaaacatgaaactttacattggggatcaaggt gcccataacattcaacagtgtgacctagatggacagaattgtcagcaattacaaaacctggatgatgatttgtttttctg gccaaaccaaataactgtcaaccatcaagataaacctggcagtcataactgtgagggcatttgtttgccgtcggcaaata atgtggcagtatgtgcctgtccctctggctctggcaaactggctaattcaaatggacagtgtatagatccatcttcattt gtggtctactccaatgtttactctggggaagttggtatagcagaccctgaccttgccttagccggcactatggtgattag aggtgtcaaaccactggccttgacctatgaccctgttcaaaagatgatatacttcagtgatgctgctatgatggctatat acagctgtaaaatagacggcagtgaactgagggaaatactcaactcctctaacggtataggccaagtggaaggtctagcc atagattttgagcagaggcggctttactacactaacactggatatcaagagaaagggggcgttcatttctggcacgcaat agaaatggtggatctggaagacaccaataaacgacgtcgtgtgttaacagctgtggagagacccagagcgctatatatag attctgacagcaggatgttatactacacagactggggagagaataacccccacgtcggtcgtgtgaggctggacggttat gacagacagattctttatcaagctgtgaaccctaacggtctggttatactggataataaactctacgtcactgactctcg taaccgtaccaaccagtcaccgctactcatctccagtaacttagatggtaccagtaagctgaacatgcccatcacagata tgaataacgtattctccataacaaagcgtgccactcagctattaataacagatttagacggtaatgttggcgtgtacagt acggtcggtactttacagggcacagtgaaatctcacggctttatcaaccttcattatacacaggcaatggcctccatgcc tgaagataatggaagatgcagtaacaatgtttgttcagatatatgtgtaaccactggcaaccaaaattacccaacatgcc tttgtccgacctacgaccttacatacctacagagtgacagacaaacatgttcacaaaaaaaaaagagagagagaaaaaat agaaacaggaaaaaagagagaaaaaggataaaagacttatataggaaaacaatctaccgagctaactttgatggcaccaa tgttgaagaattttacacggtaaatgaccacagtgttgtcagcctggcattgtatggtggctccctctactggacaggta tcacaaacaccacgtcccatcaaggtggaatatactccgtcaaaataagccaggtcggaaattcaccaacacaatacgtt gatggtgtagacgatccttatggcatagctgtgtatggaagtgtaatttattggacggacaacacctccggaggcatcaa gagtaaatacatacaaaactccaatgtacagtcggtatcagtgactggtggcgccaccatcagaggtctggcatggtcct cgacctttgatgtcatcgttatggcaaccaatcagggaatggtgttcaggagaagcccagcacaagatgataatcggctg gaggattccattctcaattctgcctctatgaaccttgttgccatggacacagctatcattttttcctccccctgggatga ctccacaattaatgctagtatttctacgcacgacattttgaataaagtaacaagaacattatctaccaacatggtgcgtc caggccagatggtacacgtgggatcaacagtatccaatgatttccagtgcagcaatccacctcagctacacaatggttac atgacgtgtactgtgtctggtaaggtactaagctgtcagattgaccaatgttacagtggctttgtaatgaaggagggaac gcccactcggtacacgtgtgatgctaacggagaatgggccccggttgctttcccagataggtttaccacagagacatgtt ttaaacctgcaccttccacctttgaacttgacttcagtttggtttttaattgtcctaacgctaacttcaccctgcgtgat gtccaggattgtttacagtcatcgggtttctgccctgaaggggacataactctttgtgatcaccaacgtcttggaggagg aacgaaggataacatggttaatataacaggaaatgtcgttggacttctagacagctcttctaaatccgatgatttcagtc aaggctgtccctacggtgccacacagcatgttattatgggatcgaaagtttgtgccaagtgtgcaccaggatctcgatac atctccggggaatgtcagctgtgtgatccaggcacatatcaggaagaggctggtcaggacacatgtactcaatgtccaaa cggcgagaattctatattaggttccttcttcattggacaatgtaccctaagtgcagcacccttaactgataaggaaagct cttctatgaatatggtgccagtcatcggtgccgttgttggcgtagtcgtattactgatagtagttattatcatcattgtc tttgtcaagagaagacagacggagaggaaggagacgtacagcggactggataatcccaatcaccagccgtataccatacc taacaacgcttttgaaatggatgaagaatacgcctctctcagtgaacacaagatgtgtacggaggatgatattgctgaag ctaagcggaagaaggaagacgatgacacgtattgtcaaccaagacgagctgaacccaacccgtatgagatggacctgcgc aaatctaaaatggatgaccatgattacggacaaattaaagacggaaaaccagaaaaaatggaagcatgcggcggagatga cgactatttgcaaccttga |
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Protein
| Protein ID | pfu_aug2.0_33.1_10149.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_33.1_10149.t1 MEKGGVYWTLLLILVIELCNGQDVYFSTSTKIKKRNTNTGNEVDIVSKSDSRFLGLAAHLGDSKLYYVDVADATLGIYRK NLDGTGAEERIVQYPHMSPVGLAVDWVFNHLYWTDPVYQAVMMSNLDGSGRVALVTKGLSIPRGIAVDPKNMKLYIGDQG AHNIQQCDLDGQNCQQLQNLDDDLFFWPNQITVNHQDKPGSHNCEGICLPSANNVAVCACPSGSGKLANSNGQCIDPSSF VVYSNVYSGEVGIADPDLALAGTMVIRGVKPLALTYDPVQKMIYFSDAAMMAIYSCKIDGSELREILNSSNGIGQVEGLA IDFEQRRLYYTNTGYQEKGGVHFWHAIEMVDLEDTNKRRRVLTAVERPRALYIDSDSRMLYYTDWGENNPHVGRVRLDGY DRQILYQAVNPNGLVILDNKLYVTDSRNRTNQSPLLISSNLDGTSKLNMPITDMNNVFSITKRATQLLITDLDGNVGVYS TVGTLQGTVKSHGFINLHYTQAMASMPEDNGRCSNNVCSDICVTTGNQNYPTCLCPTYDLTYLQSDRQTCSQKKKRERKN RNRKKERKRIKDLYRKTIYRANFDGTNVEEFYTVNDHSVVSLALYGGSLYWTGITNTTSHQGGIYSVKISQVGNSPTQYV DGVDDPYGIAVYGSVIYWTDNTSGGIKSKYIQNSNVQSVSVTGGATIRGLAWSSTFDVIVMATNQGMVFRRSPAQDDNRL EDSILNSASMNLVAMDTAIIFSSPWDDSTINASISTHDILNKVTRTLSTNMVRPGQMVHVGSTVSNDFQCSNPPQLHNGY MTCTVSGKVLSCQIDQCYSGFVMKEGTPTRYTCDANGEWAPVAFPDRFTTETCFKPAPSTFELDFSLVFNCPNANFTLRD VQDCLQSSGFCPEGDITLCDHQRLGGGTKDNMVNITGNVVGLLDSSSKSDDFSQGCPYGATQHVIMGSKVCAKCAPGSRY ISGECQLCDPGTYQEEAGQDTCTQCPNGENSILGSFFIGQCTLSAAPLTDKESSSMNMVPVIGAVVGVVVLLIVVIIIIV FVKRRQTERKETYSGLDNPNHQPYTIPNNAFEMDEEYASLSEHKMCTEDDIAEAKRKKEDDDTYCQPRRAEPNPYEMDLR KSKMDDHDYGQIKDGKPEKMEACGGDDDYLQP |
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