Gene
| Gene Model ID | pfu_aug2.0_332.1_07368 |
|---|---|
| Locus | scaffold332.1 : 127903 ... 137635 : - |
| To GenomeBrowser | scaffold332.1:127903..137635 |
| Genes list of scaffold | scaffold332.1 |
| Synonym | pfu_aug1.0_7.1_14662 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_332.1_07368.t1 | 3 | 1 | C1q | 27 | 151 | 0.0 | 256.8 | 3.2e-26 | 8.0e-23 | 80.8 |
| pfu_aug2.0_332.1_07368.t1 | 3 | 2 | C1q | 170 | 298 | 0.0 | 256.8 | 1.3e-25 | 3.1e-22 | 78.9 |
| pfu_aug2.0_332.1_07368.t1 | 3 | 3 | C1q | 320 | 445 | 0.0 | 256.8 | 3.6e-33 | 8.8e-30 | 103.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_332.1_07368.t1 | gi|395543813|ref|XP_003773807.1| | 2.0e-20 | |
| pfu_aug2.0_332.1_07368.t1 | gi|663275613|ref|XP_008496464.1| | PREDICTED: complement C1q tumor necrosis factor-related protein 4 isoform X2 [Calypte anna] | 1.0e-19 |
| pfu_aug2.0_332.1_07368.t1 | gi|529444479|ref|XP_005241953.1| | PREDICTED: complement C1q tumor necrosis factor-related protein 4 [Falco peregrinus] | 1.0e-19 |
| pfu_aug2.0_332.1_07368.t1 | gi|541993473|ref|XP_005446993.1| | PREDICTED: complement C1q tumor necrosis factor-related protein 4 [Falco cherrug] | 2.0e-19 |
| pfu_aug2.0_332.1_07368.t1 | gi|675410195|ref|XP_008918001.1| | PREDICTED: complement C1q tumor necrosis factor-related protein 4 isoform X2 [Manacus vitellinus] | 4.0e-19 |
Transcript
| Transcript ID | pfu_aug2.0_332.1_07368.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_332.1_07368.t1 atgattgcagtggttgccctttctattctagttggatgtgccatagcacaaccacaaaaccctccacaaattgtgggttt cactcttggacagacaagtcatctacacataacaaaaggggatagaattgtctacaataagaacataacagaaattggaa cgaatgttgatccgacgtccggtgttttcacatgccagattcctgggttgtacgtgttctccatgtacagtttgacaaga agcgatggtgaattatggctagagctcatgaagaacaacgagcttgtggcatcaatttatgcctatacctatgctgatta tgcagatgctggtaatgcagctgtactaaaactacagaagggcgacacggtgtacgtcaaagctcatgatgattatgaca actccttgtacgggggagcgtcggagatatacacaacacttaccggcgaactggtattccctgatgctaaagaactggat tccgccaatgctgtaagcgctgtgggtttcactgcagctttgtctgtgaatgcatccttaccaaacggaactcaagtagt atatgatcatgtggtcaccaatgtctccccgcaaggcggcggatatgacgcaacaaccggaactttcacagcaccaattg acggcgcctacgtattccatttctatgctgttgctcattccagcgaggaattctggttagagctgttccataacaatgac tttgttgagtcatcatacggttacacaagtggttcctacgccgatgccggcaatacagccgtgcttcaccttaagaaagg agacaccgtctacgtaaaggcgcgtccgggacatagcgtgcagctttatggggatagcgacgagctctatactactttct caggggctctgttgtcccctgctgtgatagccacacaagctggaggaggtgtgtcaaatcctggtcaacaagaaatagcc ttttctgtcggactgacacacaacttcgcctcatcaaatggtgacaaggtattattcaatcgggtgttctcaaatcttgg acaaaagtacgatatcaacacaggaattttcacagctcccgtcaccggtgtctatgtattccactatcacgtgctcgccc aatatgcacaggaagtctgggttgaactgatgcataactaccactacatcaacactgcatacggacatacctccaatagt tatggagttggaggtaatgccgcggtcattgaactgacgtctggcgaccaagtgtacctagatattggaaaacacgattc cctcctttatggcggaactgacgaagtttactgcaccttttctgggtatcttctggcgccacttccaaacttccatccag ttgttggctaa |
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Protein
| Protein ID | pfu_aug2.0_332.1_07368.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_332.1_07368.t1 MIAVVALSILVGCAIAQPQNPPQIVGFTLGQTSHLHITKGDRIVYNKNITEIGTNVDPTSGVFTCQIPGLYVFSMYSLTR SDGELWLELMKNNELVASIYAYTYADYADAGNAAVLKLQKGDTVYVKAHDDYDNSLYGGASEIYTTLTGELVFPDAKELD SANAVSAVGFTAALSVNASLPNGTQVVYDHVVTNVSPQGGGYDATTGTFTAPIDGAYVFHFYAVAHSSEEFWLELFHNND FVESSYGYTSGSYADAGNTAVLHLKKGDTVYVKARPGHSVQLYGDSDELYTTFSGALLSPAVIATQAGGGVSNPGQQEIA FSVGLTHNFASSNGDKVLFNRVFSNLGQKYDINTGIFTAPVTGVYVFHYHVLAQYAQEVWVELMHNYHYINTAYGHTSNS YGVGGNAAVIELTSGDQVYLDIGKHDSLLYGGTDEVYCTFSGYLLAPLPNFHPVVG |
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