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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_3347.1_25725
Locus scaffold3347.1 : 59668 ... 61532 : -
To GenomeBrowser scaffold3347.1:59668..61532
Genes list of scaffold scaffold3347.1
Synonym pfu_aug1.0_197.1_22064

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_3347.1_25725.t1 3 1 zf-B_box 17 59 3.4e-11 42.8 2.7e-08 3.4e-05 23.6
pfu_aug2.0_3347.1_25725.t1 3 2 zf-B_box 76 112 3.4e-11 42.8 3.2e-10 4.0e-07 29.8
pfu_aug2.0_3347.1_25725.t1 5 1 SGL 90 158 3.4e-06 26.6 0.37 460.0 -0.1
pfu_aug2.0_3347.1_25725.t1 3 3 zf-B_box 262 287 3.4e-11 42.8 3.7 4600.0 -2.4
pfu_aug2.0_3347.1_25725.t1 5 2 SGL 306 400 3.4e-06 26.6 0.0012 1.4 8.1
pfu_aug2.0_3347.1_25725.t1 5 1 NHL 381 392 9.5e-07 28.4 0.23 290.0 1.7
pfu_aug2.0_3347.1_25725.t1 5 3 SGL 409 469 3.4e-06 26.6 0.0084 10.0 5.3
pfu_aug2.0_3347.1_25725.t1 5 2 NHL 416 431 9.5e-07 28.4 0.18 220.0 2.0
pfu_aug2.0_3347.1_25725.t1 5 3 NHL 465 480 9.5e-07 28.4 2.1 2500.0 -1.3
pfu_aug2.0_3347.1_25725.t1 5 4 SGL 512 550 3.4e-06 26.6 0.0029 3.6 6.8
pfu_aug2.0_3347.1_25725.t1 5 4 NHL 514 535 9.5e-07 28.4 0.00013 0.16 11.9
pfu_aug2.0_3347.1_25725.t1 5 5 NHL 555 571 9.5e-07 28.4 4.2e-05 0.052 13.5
pfu_aug2.0_3347.1_25725.t1 5 5 SGL 556 575 3.4e-06 26.6 0.045 55.0 3.0

Transcript
Transcript IDpfu_aug2.0_3347.1_25725.t1
Definition-
>pfu_aug2.0_3347.1_25725.t1
atggcggagggtttcagtcttccattacaatttccccagacgacagtggaatgtgagaaatgcagtgctgacgttgatgt
cacgtggttttgtaagaactgtcctgcctccctctgcaataactgcaaagaagaccattccagagataaactgatgagaa
agcatgaagtggtaccaagatctggaagcgtattaaggtcccatggatcatggaaagtgagagaatcatgtaaaatgcac
aaaaacagtgatttaataacttactgtaatgattgtaaagaaccatgttgtattgattgtatggaagaaaaacatcatcg
ccatgctttcacaaaacttgatacgaaatatttcgaagccgagtctcgccttaactttctggtagatgttctgtcaaaat
ctacgatactaaccattcaaaatgagatttcaagtttgaaacaaaatattgaaactttcaatgaaaatttcaatctcgtg
aatacagaattaaacacagctgagaacaaagttatgacaactgtcgcagagtcttttaaaaaattacgcaaaaatctgtc
tgtgaaacaaaaggaattagtatctaaaagagaggatagaatcaaacgatgtggccatcagatgaatgaaattgaaagtt
tcattgcaagtactgaacagaaaattagggcagggggtctggatctgatagagtactttcctatccttcctaccctccag
tcattccactctgacataaccactcctgttccttgctttgaattaaatgaagccattctgaacgaatgtgaaacaaacat
agggcagctatgttttcaagatagaaaatctgattcaagtcacgaatcattacacaatgttagtgttagtaataaagaga
aaaatgacgaatctgtggaaacggataaagagggggtaagtgtatctggcattaaagaagaaaagatagatagtttcaaa
acacctatttctatttcgagtatagaacctgtaggtgatggcacagcatggattgcaagtgttgaaagtgacacaatgta
tctatatgacatcagaggtaaagagataaggtcagttataatgaagggacagagaggattcttaaaaaaagcgaaaaaga
tagagatttacgacatggttttacagagcaatggtgatattgtagtggcatgctttgacgacaaggtaagacgtgtgtca
gttagtggtaagataactactctaattgacacaacaccatttatcccttatggagtgtgtctgacagacagggaggagat
agtagtatgtatggcaggtcagaaggacaaaaaccacgtggctgtgtatacacctgacggtaagtcaaaggtaagggaga
taacagctagagatagtaacaacaagcagttgtttaccggaccagattgtttagttatcaatgacggtcagataacagtg
ttgaacggcgctgagaacgttgtgtccttggatcaacacagtggtaaggtactctgggtgtatgatggtagtcaggcttc
acttaaagagaactttgatccctcaggaatctgtaaggataacttctcaaatattcttgtcactgattatgaaaaccatt
gtattcattatatcaacaagaaaggaagtttgataagcattataatggttaaagattatggattaaaaaacccatgggga
atatgtgtggacagtcagagtggaaatatatggtgtgggaatacagaagacaaagttctgttactgaaatatccaagata
a

Protein
Protein IDpfu_aug2.0_3347.1_25725.t1
Definition-
>pfu_aug2.0_3347.1_25725.t1
MAEGFSLPLQFPQTTVECEKCSADVDVTWFCKNCPASLCNNCKEDHSRDKLMRKHEVVPRSGSVLRSHGSWKVRESCKMH
KNSDLITYCNDCKEPCCIDCMEEKHHRHAFTKLDTKYFEAESRLNFLVDVLSKSTILTIQNEISSLKQNIETFNENFNLV
NTELNTAENKVMTTVAESFKKLRKNLSVKQKELVSKREDRIKRCGHQMNEIESFIASTEQKIRAGGLDLIEYFPILPTLQ
SFHSDITTPVPCFELNEAILNECETNIGQLCFQDRKSDSSHESLHNVSVSNKEKNDESVETDKEGVSVSGIKEEKIDSFK
TPISISSIEPVGDGTAWIASVESDTMYLYDIRGKEIRSVIMKGQRGFLKKAKKIEIYDMVLQSNGDIVVACFDDKVRRVS
VSGKITTLIDTTPFIPYGVCLTDREEIVVCMAGQKDKNHVAVYTPDGKSKVREITARDSNNKQLFTGPDCLVINDGQITV
LNGAENVVSLDQHSGKVLWVYDGSQASLKENFDPSGICKDNFSNILVTDYENHCIHYINKKGSLISIIMVKDYGLKNPWG
ICVDSQSGNIWCGNTEDKVLLLKYPR

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