Gene
| Gene Model ID | pfu_aug2.0_335.1_17302 |
|---|---|
| Locus | scaffold335.1 : 10436 ... 17799 : + |
| To GenomeBrowser | scaffold335.1:10436..17799 |
| Genes list of scaffold | scaffold335.1 |
| Synonym | pfu_aug1.0_5765.1_45291 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| reverse transcriptase family protein | GO:0006259 GO:0046872 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_335.1_17302.t1 | 1 | 1 | RVT_1 | 275 | 433 | 7.3e-17 | 61.4 | 8.5e-21 | 1.3e-16 | 60.6 |
Transcript
| Transcript ID | pfu_aug2.0_335.1_17302.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_335.1_17302.t1 atgaaagataaaaactctgacaataaactcgtcagcagaagaaagataacaggtagcgcagatgctgtagcagatctgaa taaaattgtatctaagaacaaagacgcagataagcttgagaagcttcatgaatggaacgacaataagaaagcattattat tgggagtaagtcttagaagttctgcgctgcagataatgagtaatctaagtaatgacaagaaggcagattacaaggagctt gtaaccgcgcgagtgaaacgatttgcaccgccaaacattgaagaactttataaagatgagctcaggatgcgacagagaaa gcaaggaaaatcactcttggaattaggacaagctatcgcattagaacttgattcatgtatgcaagcagagaaaaagcgag catcaaaatcgcataagatggtaagagaagtagagtcagacacaaccaacgggccagcagacgatagaacaaccgaaatc gataagttaacatcagatgtgcagcagcagaagaaactggcgcataaggagaacctgagaggcagacgaaaaaatcgagg aagaggaagaggcaagcccttggatagaaatgacgtcgtttgttacaactgcaatcagaagggtcagtcgtgtccacagt caaaggaagcagaagaaaactcgtccgagacaccaaaggaagtgaaaagtatcagacagcagcctcggcaagtaccatac aagctgaaaaaggaaatcgacaagcaaatagacagtatgttggctaacaagataattaggccttcatcaagtcattggga tagtcatattgtattagcacgtaagaaggattcatcattacgattctgcatcgattttagaaagttaaacgccatgacaa taaaggatgcttatcctttaccaaggatagacgattcgttagattcactaggaggatcaagatggttctgtactcttgat atgatgtgtggatattggcaggtagaagtagccgaagaggataaacagaaaactgcattcacatctcaaagaggaatttt cgagttcaatgtaatgccgtttggactgtgcaacgccgccggaacatttgaacgtttaatgcagacagtatctgcaggcc ttagatgggacatttgcttgatatatctagacgctatcattgtcttcagttcaacatttgaggaacatttggaaaggctg gatgtgatcttcaaacgtctttttgaagcaggattgagacttagaagtgaaaagtgcagtctctttaaacacagagtatc ctaccttggacacattattgctgagaagggagtcgagacggatcaaggaagaatcagaatagaccatgaagcagcactga acagaccagatgacacagttgcagttatcaatttaagtgaagcgaaggaagacataaggcagcgaaaggcaaacgaccca gaaatagcagaagtcatgaaatggattgcatatggaaaattaccaaagtgggataagatatcgacacgaaacatcacgct gaaggcgcaatggacacaggttgaccagttatcaatcgacaatgaagtcttatacaggaagtggaatacaaaacacggaa aggtagacagactgcaagttgttgtgccacgtccgttcagagtcactgtgctacagcaatgccacgatgcgccttccgca ggacatttaagaaggcagagaacattaatgaaagtaaagctgaatttctattggcctggtatggacagggcttcaccgcc acacgcagcctatatctctgtatacaatccgaaacggagaaaaccggttagtgccgcagccggatcgcctaaaggacgac gcagcgaatgcaatgtcttaatgcattctgtttcgccatctagagggtacgatgctagatctcgagcgcctacatccaat tcgaaagaagtacaggtcgatgggagctcaactctgaaggatgtcgcatgccaagctgacctacgaggatcgggagatgt cgtacgctgtgataccgcgattcagtgtgacatggacatttggaagattaaggatacgcgcaccgtacatactcagtgcc atggcatcgcgatccgagacaagtga |
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Protein
| Protein ID | pfu_aug2.0_335.1_17302.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_335.1_17302.t1 MKDKNSDNKLVSRRKITGSADAVADLNKIVSKNKDADKLEKLHEWNDNKKALLLGVSLRSSALQIMSNLSNDKKADYKEL VTARVKRFAPPNIEELYKDELRMRQRKQGKSLLELGQAIALELDSCMQAEKKRASKSHKMVREVESDTTNGPADDRTTEI DKLTSDVQQQKKLAHKENLRGRRKNRGRGRGKPLDRNDVVCYNCNQKGQSCPQSKEAEENSSETPKEVKSIRQQPRQVPY KLKKEIDKQIDSMLANKIIRPSSSHWDSHIVLARKKDSSLRFCIDFRKLNAMTIKDAYPLPRIDDSLDSLGGSRWFCTLD MMCGYWQVEVAEEDKQKTAFTSQRGIFEFNVMPFGLCNAAGTFERLMQTVSAGLRWDICLIYLDAIIVFSSTFEEHLERL DVIFKRLFEAGLRLRSEKCSLFKHRVSYLGHIIAEKGVETDQGRIRIDHEAALNRPDDTVAVINLSEAKEDIRQRKANDP EIAEVMKWIAYGKLPKWDKISTRNITLKAQWTQVDQLSIDNEVLYRKWNTKHGKVDRLQVVVPRPFRVTVLQQCHDAPSA GHLRRQRTLMKVKLNFYWPGMDRASPPHAAYISVYNPKRRKPVSAAAGSPKGRRSECNVLMHSVSPSRGYDARSRAPTSN SKEVQVDGSSTLKDVACQADLRGSGDVVRCDTAIQCDMDIWKIKDTRTVHTQCHGIAIRDK |
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