Gene
| Gene Model ID | pfu_aug2.0_340.1_00632 |
|---|---|
| Locus | scaffold340.1 : 184666 ... 192390 : + |
| To GenomeBrowser | scaffold340.1:184666..192390 |
| Genes list of scaffold | scaffold340.1 |
| Synonym | pfu_aug1.0_7.1_14636 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_340.1_00632.t1 | 3 | 1 | SNARE_assoc | 15 | 21 | 3.2e-19 | 69.3 | 0.19 | 2800.0 | -1.6 |
| pfu_aug2.0_340.1_00632.t1 | 3 | 2 | SNARE_assoc | 84 | 204 | 3.2e-19 | 69.3 | 2.2e-23 | 3.2e-19 | 69.3 |
| pfu_aug2.0_340.1_00632.t1 | 3 | 3 | SNARE_assoc | 227 | 233 | 3.2e-19 | 69.3 | 0.83 | 12000.0 | -3.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_340.1_00632.t1 | gi|198437777|ref|XP_002128025.1| | PREDICTED: transmembrane protein 41A-A-like [Ciona intestinalis] | 0.0 |
| pfu_aug2.0_340.1_00632.t1 | gi|390340012|ref|XP_003725148.1| | PREDICTED: transmembrane protein 41A [Strongylocentrotus purpuratus] | 0.0 |
| pfu_aug2.0_340.1_00632.t1 | gi|156405930|ref|XP_001640984.1| | predicted protein [Nematostella vectensis] | 0.0 |
| pfu_aug2.0_340.1_00632.t1 | gi|66472764|ref|NP_001018601.1| | transmembrane protein 41A-A precursor [Danio rerio] | 0.0 |
| pfu_aug2.0_340.1_00632.t1 | gi|524867521|ref|XP_005090571.1| | PREDICTED: transmembrane protein 41A-B-like [Aplysia californica] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_340.1_00632.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_340.1_00632.t1 atgggttctataatatggattccaattgttctgactgtttattcatcctatctgtattttctgtcggtgaacctgccaga gataaatgctgagaagtttgatggagtttcaaaagatgcattgaagttccccacatcactagaggatatttcctctctat caaagctcctcaccttatacaagcaagagcatctcttctacgtagttctactgttctgtagtgcctatgtatacaaacag acatttgccattcctggatctgtctttatgaatttactcggtggagctctgtttggagtccacgtggcatttccgttagt ttgtttgctgactgcagctggtgccacctgctgttatttcctgtcaagattttttgggagacaacacatactaaagtatt ttcctgagaaagtaaaagttatgcagaacaaggtagaggagaactacgacagcttgttctttttcctgttatttctaaga tttttcccgatgtcaccaaactggttcctgaacatggcttctccaatactcaatattcctgctcatctgtttttcttgtc tgttctcataggactgatgccatataattttatatgtgttcagacgggtagcatgttatctgagattcgttcattggatg atatattttcctcatggacattagcgaagctggctggtatagccatcatggcgttacttcctggaatgctcatacggaaa ctcaaagacaaaaacttgaagtcattgtag |
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Protein
| Protein ID | pfu_aug2.0_340.1_00632.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_340.1_00632.t1 MGSIIWIPIVLTVYSSYLYFLSVNLPEINAEKFDGVSKDALKFPTSLEDISSLSKLLTLYKQEHLFYVVLLFCSAYVYKQ TFAIPGSVFMNLLGGALFGVHVAFPLVCLLTAAGATCCYFLSRFFGRQHILKYFPEKVKVMQNKVEENYDSLFFFLLFLR FFPMSPNWFLNMASPILNIPAHLFFLSVLIGLMPYNFICVQTGSMLSEIRSLDDIFSSWTLAKLAGIAIMALLPGMLIRK LKDKNLKSL |
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