Gene
| Gene Model ID | pfu_aug2.0_3422.1_09138 |
|---|---|
| Locus | scaffold3422.1 : 35126 ... 58940 : + |
| To GenomeBrowser | scaffold3422.1:35126..58940 |
| Genes list of scaffold | scaffold3422.1 |
| Synonym | pfu_aug1.0_2350.1_08301 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3422.1_09138.t1 | 2 | 1 | rve | 6 | 68 | 4.4e-06 | 26.7 | 1.6e-09 | 1.2e-05 | 25.3 |
| pfu_aug2.0_3422.1_09138.t1 | 2 | 2 | rve | 202 | 214 | 4.4e-06 | 26.7 | 1.7 | 13000.0 | -3.8 |
| pfu_aug2.0_3422.1_09138.t1 | 1 | 1 | Chromo | 334 | 379 | 1.9e-06 | 27.4 | 5.6e-10 | 4.1e-06 | 26.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3422.1_09138.t1 | gi|557024871|ref|XP_006012602.1| | PREDICTED: uncharacterized protein LOC102366250 [Latimeria chalumnae] | 5.0e-19 |
| pfu_aug2.0_3422.1_09138.t1 | gi|557014387|ref|XP_006007698.1| | PREDICTED: uncharacterized protein LOC102354893 [Latimeria chalumnae] | 2.0e-18 |
| pfu_aug2.0_3422.1_09138.t1 | gi|512831819|ref|XP_004913230.1| | 4.0e-18 | |
| pfu_aug2.0_3422.1_09138.t1 | gi|512825446|ref|XP_002933672.2| | 1.0e-17 | |
| pfu_aug2.0_3422.1_09138.t1 | gi|558211569|ref|XP_006133816.1| | PREDICTED: uncharacterized protein LOC102454333, partial [Pelodiscus sinensis] | 5.0e-17 |
Transcript
| Transcript ID | pfu_aug2.0_3422.1_09138.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3422.1_09138.t1 atgccagttgctacagctctgtttgacttattcacaagctatggtgtttgtgaaactttaattacagactgcggtacaga gttcacagcacaagtcacagagaaagtttgcgagctattgcgtttagagaaacagtttacacctccgtatactcatcatt gtctcggagcatgtgggcgcactcacagatacctagcgaaacgcttaacaccatcagtaaaggaagatgagcgtacatgg gacacctttttgcaagggactgtattttctatgaacaccactgtgaactcaagttctggattttctccatttgaagtgat ctatcgacaccgtccaagatttccacttctatcagcagacgtaaatttggacaccgtaccaggagatcatcatgtatttg tagcaaccatgtgtaaacacctagagcacattcgaaccgaaatggaagaacatttagcgaattcgaaacaatgcatggag gatcgggttaattcgaaatcaaaccctttacaagtgaaaactggagactatgtttacttgttacatggcggaaattcatt aggacgcaaaatacatgataggtaccaaggacctctagttgtacaggaattatgctccgatcacactgtcaagcttcgca accctaaaacagggcaaatcagtgattcagtaatacatatgaaccgcttaaagatggtgtttgtgcgtgaaccacatcca tcttcatattttctaggtaatgtttcttcgaaaactattattaagcatgtcgacgcacaaactcaggttttgacggagga gtttatgagtactaccgggcttggtgtggattgtaatcaaagtgatagagacactgctgttcgggtggaagttccacgaa tgtcgaatgaaaggccaagtccgaagtcgataccgttgcgtccaaagcgtaacattcggaaacctttgcgttatcagtcc tcatccgcagaaataagtactgactctgcctcacccttttataaaattaagaaaatcatttgtcaacgactttgtgaggg tcagaaagagtatttggttcagttttcaggggaaccaacacaaaatacaatgtgggtagcttatgaggatttaaatgcaa aatgtcaaggtctagtcgacgtcaggagtttgcctccccctgttttgaattga |
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Protein
| Protein ID | pfu_aug2.0_3422.1_09138.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3422.1_09138.t1 MPVATALFDLFTSYGVCETLITDCGTEFTAQVTEKVCELLRLEKQFTPPYTHHCLGACGRTHRYLAKRLTPSVKEDERTW DTFLQGTVFSMNTTVNSSSGFSPFEVIYRHRPRFPLLSADVNLDTVPGDHHVFVATMCKHLEHIRTEMEEHLANSKQCME DRVNSKSNPLQVKTGDYVYLLHGGNSLGRKIHDRYQGPLVVQELCSDHTVKLRNPKTGQISDSVIHMNRLKMVFVREPHP SSYFLGNVSSKTIIKHVDAQTQVLTEEFMSTTGLGVDCNQSDRDTAVRVEVPRMSNERPSPKSIPLRPKRNIRKPLRYQS SSAEISTDSASPFYKIKKIICQRLCEGQKEYLVQFSGEPTQNTMWVAYEDLNAKCQGLVDVRSLPPPVLN |
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