Gene
| Gene Model ID | pfu_aug2.0_3429.1_32475 |
|---|---|
| Locus | scaffold3429.1 : 50497 ... 62866 : - |
| To GenomeBrowser | scaffold3429.1:50497..62866 |
| Genes list of scaffold | scaffold3429.1 |
| Synonym | pfu_aug1.0_1814.1_00859 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3429.1_32475.t1 | 1 | 1 | Nop53 | 1 | 36 | 8.6e-15 | 54.6 | 3.0e-18 | 1.5e-14 | 53.8 |
| pfu_aug2.0_3429.1_32475.t1 | 5 | 1 | WD40 | 307 | 313 | 1.4e-08 | 34.2 | 1.2 | 5700.0 | -2.6 |
| pfu_aug2.0_3429.1_32475.t1 | 5 | 2 | WD40 | 356 | 376 | 1.4e-08 | 34.2 | 2.3 | 12000.0 | -3.5 |
| pfu_aug2.0_3429.1_32475.t1 | 5 | 3 | WD40 | 502 | 526 | 1.4e-08 | 34.2 | 0.13 | 650.0 | 0.4 |
| pfu_aug2.0_3429.1_32475.t1 | 5 | 4 | WD40 | 586 | 602 | 1.4e-08 | 34.2 | 0.0017 | 8.3 | 6.4 |
| pfu_aug2.0_3429.1_32475.t1 | 5 | 5 | WD40 | 614 | 643 | 1.4e-08 | 34.2 | 8.7e-11 | 4.3e-07 | 29.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3429.1_32475.t1 | gi|746838674|ref|XP_011049801.1| | PREDICTED: F-box/WD repeat-containing protein 5 isoform X1 [Acromyrmex echinatior] | 0.0 |
| pfu_aug2.0_3429.1_32475.t1 | gi|746838679|ref|XP_011049803.1| | PREDICTED: F-box/WD repeat-containing protein 5 isoform X2 [Acromyrmex echinatior] | 0.0 |
| pfu_aug2.0_3429.1_32475.t1 | gi|751234142|ref|XP_011170786.1| | PREDICTED: F-box/WD repeat-containing protein 5 [Solenopsis invicta] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_3429.1_32475.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3429.1_32475.t1 atatgaggaaccagaaattgaagtcaaattgagtgatgagctacagggatctcttagaaaacttaagccagaggggaacc ttttagaggacagatacaagagtctgcaaaaacgcaatgtgatagaaccaaggcaacaagctaagtatgatatacactgg gaacctacaatggaattgtcaactccaatcctgctcctctctctggcacaatatggtaagctttacaatgagaacctaca ctggataggtcgtcaccaatcctgcttctctttctggctcaataaggcatatcaagctactgagtctgagcatgaatcag ttgtgatgaggctttacagattccagaatgtcaatgcaagctcaatacgcacaataatgatcgctaagtgtttaaacgat caagaaaataacaatacatgtcagcgtgaaacccactgctgccaagctaagtgtctcaatagtaataccggtggaatatt ttccgtggaaggagacaattttgcttgtagcagcaatgttttagatggaacttgtcctgaaaccccggcaccgagtgata atgtgtgtcagaaaatacagcatcttactatgtttgaggatggcagctttaaaacaaaaatgattgctgtagattctgat agctgcttgggaagactgaatggtacgtttgagtataactctgaatacagagcagctgagggtggtatgtccccacccca gagtagcacattgtcaacaacggacgcaacagatgttctgatgacgtctgattcttcatctgatatgaagtctttagaaa gtgcctcaggagtgtcagggctgaaacgatcgctacagtgtaatagagatgtgaaaggacaaattacacgacgaggaagt gaaggtaaaatgatgaagacatccgagctgaatctagatagtgctgatggtaccgtcaaaaatcaaacgaaatcactcaa gtgcaactctatgacgaaacagggtagctcatgtggatgtgacttggataagaaaataaggtcatcggcatctgattcct cgatgccatctgtaaattctagtcagtgtgtgtcagacttagctacggaggacagagactgtgagtgctgtgaccactgt agccacggactgtatctggatgggtcagttaatggttatcctttacagtctaacttttttctgggttccgaccacagtca cgctgtgttagattggaaccctttctcacctctacatgagggagatgatagtgtcagatactcattatcagagaactcta ccaaaagggacggcaaatcttcacataccgatacgtctgcagcagatctctttccggataaatacttgatatttacaatg ggagagaaaacatatacgcctcaccagatcgggattaaaaggataaaagctgtagaaaagataacgaagaatggagtgca agttttaccgaacgtagaggaaaatttacatgggatggatagagcagattttgatgatgtagaccatactatagatttac atggccatatcataggaatgtgcctatctcctgatcacagatacctgtacgtaaacagtcgaccttggcctaagaactac gtaatagagaatgtcctgtatcctcctcccatcgctcaggagatagacgtccatgtaatagacctggttaagatgaggga ggtcggtaaaatgttccaggcgcacaaagcatacacgcctaacgacgaatgcttcttcatcttcctggacgtttgtgatg aatatgtggccagtggtgcggaggataagcatggatacatttgggacagacattacgggatctgccttaacaaattcccc cacaccgacgtggttaactgtgtggcctttaaccccagagactcggagatgttagttaccgtcagtgacgatcagtctat ccgaatctggagatctcggcatcatcagaaacatctcaataaaatacccgatacacgatggtgtaacagcagctag |
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Protein
| Protein ID | pfu_aug2.0_3429.1_32475.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3429.1_32475.t1 YEEPEIEVKLSDELQGSLRKLKPEGNLLEDRYKSLQKRNVIEPRQQAKYDIHWEPTMELSTPILLLSLAQYGKLYNENLH WIGRHQSCFSFWLNKAYQATESEHESVVMRLYRFQNVNASSIRTIMIAKCLNDQENNNTCQRETHCCQAKCLNSNTGGIF SVEGDNFACSSNVLDGTCPETPAPSDNVCQKIQHLTMFEDGSFKTKMIAVDSDSCLGRLNGTFEYNSEYRAAEGGMSPPQ SSTLSTTDATDVLMTSDSSSDMKSLESASGVSGLKRSLQCNRDVKGQITRRGSEGKMMKTSELNLDSADGTVKNQTKSLK CNSMTKQGSSCGCDLDKKIRSSASDSSMPSVNSSQCVSDLATEDRDCECCDHCSHGLYLDGSVNGYPLQSNFFLGSDHSH AVLDWNPFSPLHEGDDSVRYSLSENSTKRDGKSSHTDTSAADLFPDKYLIFTMGEKTYTPHQIGIKRIKAVEKITKNGVQ VLPNVEENLHGMDRADFDDVDHTIDLHGHIIGMCLSPDHRYLYVNSRPWPKNYVIENVLYPPPIAQEIDVHVIDLVKMRE VGKMFQAHKAYTPNDECFFIFLDVCDEYVASGAEDKHGYIWDRHYGICLNKFPHTDVVNCVAFNPRDSEMLVTVSDDQSI RIWRSRHHQKHLNKIPDTRWCNSS |
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