Gene
| Gene Model ID | pfu_aug2.0_343.1_10639 |
|---|---|
| Locus | scaffold343.1 : 125944 ... 155135 : - |
| To GenomeBrowser | scaffold343.1:125944..155135 |
| Genes list of scaffold | scaffold343.1 |
| Synonym | pfu_aug1.0_19762.1_69292 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| coatomer subunit alpha | GO:0005198 GO:0006886 GO:0016192 GO:0030126 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_343.1_10639.t1 | 6 | 1 | WD40 | 81 | 103 | 3.3e-32 | 109.1 | 0.00096 | 4.7 | 7.2 |
| pfu_aug2.0_343.1_10639.t1 | 6 | 2 | WD40 | 110 | 145 | 3.3e-32 | 109.1 | 2.1e-11 | 1.0e-07 | 31.5 |
| pfu_aug2.0_343.1_10639.t1 | 6 | 3 | WD40 | 150 | 170 | 3.3e-32 | 109.1 | 0.01 | 51.0 | 3.9 |
| pfu_aug2.0_343.1_10639.t1 | 6 | 4 | WD40 | 239 | 274 | 3.3e-32 | 109.1 | 3.3e-12 | 1.7e-08 | 34.0 |
| pfu_aug2.0_343.1_10639.t1 | 6 | 5 | WD40 | 286 | 319 | 3.3e-32 | 109.1 | 8.3e-12 | 4.1e-08 | 32.7 |
| pfu_aug2.0_343.1_10639.t1 | 6 | 6 | WD40 | 331 | 354 | 3.3e-32 | 109.1 | 2.4 | 12000.0 | -3.6 |
| pfu_aug2.0_343.1_10639.t1 | 1 | 1 | Coatomer_WDAD | 411 | 680 | 0.0 | 298.3 | 0.0 | 0.0 | 297.7 |
| pfu_aug2.0_343.1_10639.t1 | 1 | 1 | COPI_C | 694 | 1048 | 0.0 | 588.7 | 0.0 | 0.0 | 588.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_343.1_10639.t1 | gi|676471435|ref|XP_009059178.1| | hypothetical protein LOTGIDRAFT_218145 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_343.1_10639.t1 | gi|524892175|ref|XP_005102617.1| | PREDICTED: coatomer subunit alpha-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_343.1_10639.t1 | gi|291222576|ref|XP_002731289.1| | PREDICTED: coatomer subunit alpha-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_343.1_10639.t1 | gi|148230798|ref|NP_001086488.1| | coatomer protein complex, subunit alpha [Xenopus laevis] | 0.0 |
| pfu_aug2.0_343.1_10639.t1 | gi|189230284|ref|NP_001121466.1| | coatomer subunit alpha [Xenopus (Silurana) tropicalis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_343.1_10639.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_343.1_10639.t1 atgggtttaaagtttctgtacgtcagtccgttatcagcccgattttataatccagttgttaatatcctctatgaaaaatc gttttttaacagtgatgtagaaatttatacaggtgttgaaccacataaaaaagaaaacgaaaaagggactatgaaaaggt cgctcaaagagtcctggaaaacgactgggccttggctgaagtttagggacaatgaaggtgatgcgccctcaatgatttgg ctttcctttcaccccaaacgaccatgggtgttgacaagcttgttcaatggagtgatccagttatgggattacaggatgtg cactctcatagacaaatttgatgaacatgatgggccagtacgaggtatttgctttcactttcagcagcctctgtttgtat ctggtggagatgactacaaaattaaggtatggaactataaacagaggagatgtttgtttaccctgctaggtcatcaggac tacatcagaaccacttactttcatcatgcgacacatgcattccttgaaatgattgttttgctattaattggaatcatgtc tgaattgtgtcaccgtatgatttgtaaagccagtcatggcattatacaatcacataatggactgagaaagaagaatgtgt ctcctggccctgggggaatggatgacagactgaagggagcacagacagatctgtttgggatgtccgatgctgtggtcaag catgtcctggagggtcatgaccgaggggtcaactgggcagctttccatcctaacttaccacttattgtatctggagctga tgatagacaagtcaaactatggagaatgaatgattctaaggcctgggaggtggatacatgtagagggcattataacaacg tgtcatgttgtctgttccatccccgtcaggaactcatactcagtaactcggaggacaaaagtatcagagtctgggacatg agcaaaagaactggcgttcagacatttcgacgagagcacgacagattttgggtaatggcagcacatcccactctgaacat ctttgctgcgggacatgacagcgggatgatcatcttcaaacttgagagagagagaccagcttatgccgtacacaacaaca tactgtattactgtaaggataaatatctgagaaaactggagtttggatcctccaaggattcagccgtcatgcagcttaga gggtttgtgttacagagagccagtaacccagagaactctacatatgacctgtatgccatccctaaaagtagtgattcaca gaatccagatgctccggaggggaagagatcatctggactgactgctgtttgggttgccagaaatagattcgctgtactgg atagaacacataatatcgtcatcaaaaacttgaagaatgagataacaaagaaggtgcaggcaccaaactgtgacgatata ttctacgccggtactggttgtcttctcctgagggacgctgacggcgtcaatctgtttgacgtacaacagaaaagatccct ggccaatgtgaagatatccaaggtgaagtttgtgatttggtcgtcagagatgtcacatgtagccctcatcagtaaacatg tgatttctatctgcaatagaaagttagagaacttatgtacaatccatgagaatataaagataaagagtggagcttgggat gaaagtggagtatttgtgtataccacaagtaaccacatcaaatatgccctcacaaatggtgaccatgggatcatacgtac tctggatctgccgatctacataacgcgaatcaagggtaacagtgtgtactgtctagacagggaatcacgaccccgtgtcc ttggtatcgaccccacagagttcaaatttaaattggctctggtaaacagaaagtatgaagaggtcttacacatggtgagg aatgccaagctggtaggccagtccattatttcttacctacagaagaagggctaccctgaggttgcgttacattttgtcaa agacgagaagacaagatttggattggcactagagtgtgagggaggatttggtggtgaggggttggatgatgaggcactgg tgggtggggatgaagaaggtggcggctgggatgtgggtgatgatgaccttgaacttcctgctgaccttgacattggtcct tccagtgcaggaggtggggaggaaggatattttgtaccacccacgaaaggcactagccaatcacaggtttggtgtaacaa ttctcagttaccagttgatcatattctagcgggatcgtttgagacggcaatgcgtttgttacatgatcaggtgggagtgg tggagtttgagtcttacaaacaactctttatgcagacatattctcgcagtagaacttgttttaacggtttaccatctgta ccaccactgtttggatatccacatagaaactggaaagaagccggagcacggagtggagttcccagtgtaggtctcaggtt gaacaccctggtacagcaattacaagtagcctatcagatgacgactactggcaagtttggtgatgccatagataagttcc gtagtattctactgagtgtaccgttactggtggtggataataaacaggagatagcagaggcgcagcagttaatagaaata tgtagagaatatatagtaggactctccatggaacagtcacgtaaggagcttcctaaagcgacattagaagatcagaaaag aatatgtgagatggcagcatatttcacccattgtaaccttcagcctatacatatgatccttacactacgtacagctctta atctcttctttaaactgaaaaacttcaaaacggcagcatcgtttgccaggagattgttagagctcggtcctaaacctgac gtggcagctcagacgagaaagattttagcagcttgtgagaagacgcctacagatgctcacgaactgaagtatgaccagca taatccgtttgatatctgtgcagcaacatatgtacctatttataggggtaaaccagtcgtgaaatgtccattaagtggag catgttatttaccagagttcaaaggtcaatgctgtcgagtcacggaggtgacagagattggtaaggactgtataggtctc cgaatcagtcctattcagttcagatga |
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Protein
| Protein ID | pfu_aug2.0_343.1_10639.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_343.1_10639.t1 MGLKFLYVSPLSARFYNPVVNILYEKSFFNSDVEIYTGVEPHKKENEKGTMKRSLKESWKTTGPWLKFRDNEGDAPSMIW LSFHPKRPWVLTSLFNGVIQLWDYRMCTLIDKFDEHDGPVRGICFHFQQPLFVSGGDDYKIKVWNYKQRRCLFTLLGHQD YIRTTYFHHATHAFLEMIVLLLIGIMSELCHRMICKASHGIIQSHNGLRKKNVSPGPGGMDDRLKGAQTDLFGMSDAVVK HVLEGHDRGVNWAAFHPNLPLIVSGADDRQVKLWRMNDSKAWEVDTCRGHYNNVSCCLFHPRQELILSNSEDKSIRVWDM SKRTGVQTFRREHDRFWVMAAHPTLNIFAAGHDSGMIIFKLERERPAYAVHNNILYYCKDKYLRKLEFGSSKDSAVMQLR GFVLQRASNPENSTYDLYAIPKSSDSQNPDAPEGKRSSGLTAVWVARNRFAVLDRTHNIVIKNLKNEITKKVQAPNCDDI FYAGTGCLLLRDADGVNLFDVQQKRSLANVKISKVKFVIWSSEMSHVALISKHVISICNRKLENLCTIHENIKIKSGAWD ESGVFVYTTSNHIKYALTNGDHGIIRTLDLPIYITRIKGNSVYCLDRESRPRVLGIDPTEFKFKLALVNRKYEEVLHMVR NAKLVGQSIISYLQKKGYPEVALHFVKDEKTRFGLALECEGGFGGEGLDDEALVGGDEEGGGWDVGDDDLELPADLDIGP SSAGGGEEGYFVPPTKGTSQSQVWCNNSQLPVDHILAGSFETAMRLLHDQVGVVEFESYKQLFMQTYSRSRTCFNGLPSV PPLFGYPHRNWKEAGARSGVPSVGLRLNTLVQQLQVAYQMTTTGKFGDAIDKFRSILLSVPLLVVDNKQEIAEAQQLIEI CREYIVGLSMEQSRKELPKATLEDQKRICEMAAYFTHCNLQPIHMILTLRTALNLFFKLKNFKTAASFARRLLELGPKPD VAAQTRKILAACEKTPTDAHELKYDQHNPFDICAATYVPIYRGKPVVKCPLSGACYLPEFKGQCCRVTEVTEIGKDCIGL RISPIQFR |
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