Gene
| Gene Model ID | pfu_aug2.0_343.1_10643 |
|---|---|
| Locus | scaffold343.1 : 315182 ... 319597 : - |
| To GenomeBrowser | scaffold343.1:315182..319597 |
| Genes list of scaffold | scaffold343.1 |
| Synonym | pfu_aug1.0_129.1_65246 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_343.1_10643.t1 | 2 | 1 | zf-CCHC | 148 | 164 | 2.9e-10 | 39.5 | 1.7e-09 | 5.2e-06 | 26.1 |
| pfu_aug2.0_343.1_10643.t1 | 2 | 2 | zf-CCHC | 252 | 267 | 2.9e-10 | 39.5 | 7.5e-07 | 0.0022 | 17.8 |
| pfu_aug2.0_343.1_10643.t1 | 1 | 1 | RVT_1 | 620 | 778 | 1.1e-23 | 83.7 | 6.5e-27 | 1.9e-23 | 82.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_343.1_10643.t1 | gi|512809718|ref|XP_004910398.1| | PREDICTED: uncharacterized protein LOC101734517 [Xenopus (Silurana) tropicalis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_343.1_10643.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_343.1_10643.t1 atgcgaagaaatgtcttccttagacctagtcagtcttctcagttacccccacacattcaggtatccccatcttctcagtt accccagtcttcccagtcaggggagtcccagtcttacttctcactagatgatgttagacaaaatactagacaaaaacttc ctagtccaaaagacgacgaagaaatggtcaaatggttggcaggtcaagtaaaaggtcttcagaccgctatctcggttccc cttctccaagttgtcaggacttttgaaggcgaccctagtaaattcaaacagtggatcaaagatatcgaaagatatgctca aacgcacgactggacaaatgtaagtttccccactgtttggcaaagtgatgcgcaaaacgcattaaataatcaaaactcga gggtagtagagcccatggaaattgactttttcagaaatcaaaaatgtttcaaatgtaacggtaccggacaccgtgctcgt gaatgcccgtcccccggacaaatctatagtaatcaaaaacattgggtaaaagcatttggcaactccgatgagtcagccga aaacgaagtagttccccctcccaaggcaaagaaaacccccaaaactaaaaagactaccaagaaaactgaaaacccccaac ctaaaccgcagcctaaaaagactacccaagctcctagacaaaacagagcccctaaacaaaatccccctcaaagaattccc ccggagacaccggagtggataaaaggagcagaatgttggatctgccacgtgataggtcaccttaaaagaaactgcccaaa caggagagtccccgataaaaacagaatcttaagacttaacaataagacgactattaagccgcatactgcgcaaatatgtc atgtaaagttacaaaaaggcttcaaaataccggactccagacttcttgaagtcacaaagatagacccaggatgtatctta gacgacccaggacttacactcacagaaacagtgaacacagtgaaatcaccattcaagagaggaagcgtggtaggtaaggc gagacccttgaccactcaagaaatctcggaaattcgaaaggaagaaccaatggaagttgacgaaccaaataccgacattg aagaactagtggtacctgacgacaaaagacaagaaatcatcaaactccttacgatgaacaaaaagaagggaggagatctc caacaagaccccgttgcagcatcaagagtaaaacaccataacacccgatgcaaaaacacaaaagacgagtacagcacgag acggaaaagagacacacgacatgtttacatcaaacacaaaagactacacataaaccgacgagaccaatgggtaaccggtg ccnttaacaagaagacgaccattaagccgcatactgcgcaaatatgtcatgttaagttacaaaaaggcttcaaaataccg gactccagacttcttgaagtcacaaagatagacccaggatgtatcttagacgacccaggacttacactcacagagacagt gaatacagtgaaatcaccattcaaggtaccagtcatgattgtcaacgaaacgaacaaatactaccgtcttaaaagaggaa gcgtggtagacaagaaatcatcaaactccttacgaaaaaacaaggatcttatcgccaagaaagactcggatcttgaaggg acaaagacagtacaaatgaagattgatactggagaccacacccctatcaagaacaaaccataccggactcctttgaacaa aagaaaagtcattgacaaagccatagacgaaatgtttgaggccaaggtgatccaaagatctcagtcaccctgggcgtttc ccttaatagtggtaggaaagaaagatggcagtgacaggatgtgcgtcgactttaggaccctcaacaaaatcgtgaaaccg atttcttttccacttcctttgatcgacgacatcttatcccttatagggaacgcaaagtatttcaccgccttggacttaag aagtggctactggcaggtagcccttgacgatagcagcaaagaaaagtcagcttttgcttgccaccgcggacttttcgagt tcaataggatgccctttggtctcagtaatgccccagccgtgtttcaagaactcatgaacatcgtcttacaaggatgcgaa ggatatgccatggcctatctcgacgacatcttaatcttttctctagacgatccgaaacaacacatgaaacacatagagga agtgttcaaacgactccgacaacataatcttaagctcaaacttaaaaaatgcgccttcttcaaggaagagaccgaatatc tcggaatcgttatcaacaaagatggcatatctccggatccaaagcaatcaagaacttaccagcccctaagaatgcgattc gtaccaaacttctcgaaaatagcggaacctcttatcgccttgaccaagaagtacgcaagattcaagtggacagaagaatg ccatactgccttcgattaccttaaagaaagtcttacagtggtaccccttctagcctacccagataccaacaagccttatg tgctttacacagatgcaagtaacaactgcataggagcatgtcttacccaagaaactgaccaaggagaagaaaaaccaatc tactttctgtctcacaagcttagccccacacagacaaggtggtcaactatcgaacaggaaggatttgcgatacactacgc tcttcagagacttgaccactacctacatggagcccagtttaccatcaagacagatcataaacccttgaagtatcttttgg attctccaatgcagaacaagaaaataaagctatgggcactcagtatcgcaggatacaactgtaagattgagtacgtaaaa ggagaagataaccactgtgctgatcttctatcccggataccacacaccaaaacatcaaagacgactaagaagtctaagaa aggcgaagacgaaccggacatagatgacagagcacttgaaataggagccctcaactcaaatgaattcatacccagagact tcgcaagctgtcatgtacaagatgacaatgagatcaccaaagctgtctctgaggaattcgatatgaaggaagcacaggaa aaagatcaagaaatcacaaagctatga |
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Protein
| Protein ID | pfu_aug2.0_343.1_10643.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_343.1_10643.t1 MRRNVFLRPSQSSQLPPHIQVSPSSQLPQSSQSGESQSYFSLDDVRQNTRQKLPSPKDDEEMVKWLAGQVKGLQTAISVP LLQVVRTFEGDPSKFKQWIKDIERYAQTHDWTNVSFPTVWQSDAQNALNNQNSRVVEPMEIDFFRNQKCFKCNGTGHRAR ECPSPGQIYSNQKHWVKAFGNSDESAENEVVPPPKAKKTPKTKKTTKKTENPQPKPQPKKTTQAPRQNRAPKQNPPQRIP PETPEWIKGAECWICHVIGHLKRNCPNRRVPDKNRILRLNNKTTIKPHTAQICHVKLQKGFKIPDSRLLEVTKIDPGCIL DDPGLTLTETVNTVKSPFKRGSVVGKARPLTTQEISEIRKEEPMEVDEPNTDIEELVVPDDKRQEIIKLLTMNKKKGGDL QQDPVAASRVKHHNTRCKNTKDEYSTRRKRDTRHVYIKHKRLHINRRDQWVTGAXNKKTTIKPHTAQICHVKLQKGFKIP DSRLLEVTKIDPGCILDDPGLTLTETVNTVKSPFKVPVMIVNETNKYYRLKRGSVVDKKSSNSLRKNKDLIAKKDSDLEG TKTVQMKIDTGDHTPIKNKPYRTPLNKRKVIDKAIDEMFEAKVIQRSQSPWAFPLIVVGKKDGSDRMCVDFRTLNKIVKP ISFPLPLIDDILSLIGNAKYFTALDLRSGYWQVALDDSSKEKSAFACHRGLFEFNRMPFGLSNAPAVFQELMNIVLQGCE GYAMAYLDDILIFSLDDPKQHMKHIEEVFKRLRQHNLKLKLKKCAFFKEETEYLGIVINKDGISPDPKQSRTYQPLRMRF VPNFSKIAEPLIALTKKYARFKWTEECHTAFDYLKESLTVVPLLAYPDTNKPYVLYTDASNNCIGACLTQETDQGEEKPI YFLSHKLSPTQTRWSTIEQEGFAIHYALQRLDHYLHGAQFTIKTDHKPLKYLLDSPMQNKKIKLWALSIAGYNCKIEYVK GEDNHCADLLSRIPHTKTSKTTKKSKKGEDEPDIDDRALEIGALNSNEFIPRDFASCHVQDDNEITKAVSEEFDMKEAQE KDQEITKL |
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