Gene
| Gene Model ID | pfu_aug2.0_344.1_14022 |
|---|---|
| Locus | scaffold344.1 : 50406 ... 62057 : + |
| To GenomeBrowser | scaffold344.1:50406..62057 |
| Genes list of scaffold | scaffold344.1 |
| Synonym | pfu_aug1.0_5405.1_59765 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_344.1_14022.t1 | 3 | 1 | Ank_2 | 85 | 174 | 3.3e-33 | 113.8 | 2.9e-22 | 7.1e-19 | 67.9 |
| pfu_aug2.0_344.1_14022.t1 | 5 | 1 | Ank_3 | 85 | 105 | 1.5e-21 | 74.2 | 0.79 | 1900.0 | -0.4 |
| pfu_aug2.0_344.1_14022.t1 | 5 | 1 | Ank | 86 | 103 | 5.3e-31 | 104.8 | 2.0 | 5000.0 | -2.4 |
| pfu_aug2.0_344.1_14022.t1 | 3 | 1 | Ank_4 | 86 | 131 | 1.1e-18 | 67.2 | 2.8e-05 | 0.068 | 13.7 |
| pfu_aug2.0_344.1_14022.t1 | 4 | 1 | Ank_5 | 102 | 142 | 7.3e-22 | 76.8 | 8.9e-08 | 0.00022 | 21.3 |
| pfu_aug2.0_344.1_14022.t1 | 5 | 2 | Ank | 111 | 142 | 5.3e-31 | 104.8 | 5.3e-09 | 1.3e-05 | 24.7 |
| pfu_aug2.0_344.1_14022.t1 | 5 | 2 | Ank_3 | 111 | 135 | 1.5e-21 | 74.2 | 1.4e-05 | 0.035 | 14.3 |
| pfu_aug2.0_344.1_14022.t1 | 5 | 3 | Ank | 145 | 174 | 5.3e-31 | 104.8 | 5.1e-13 | 1.2e-09 | 37.4 |
| pfu_aug2.0_344.1_14022.t1 | 4 | 2 | Ank_5 | 145 | 184 | 7.3e-22 | 76.8 | 6.0e-09 | 1.5e-05 | 25.0 |
| pfu_aug2.0_344.1_14022.t1 | 5 | 3 | Ank_3 | 145 | 171 | 1.5e-21 | 74.2 | 5.7e-08 | 0.00014 | 21.7 |
| pfu_aug2.0_344.1_14022.t1 | 3 | 2 | Ank_4 | 145 | 189 | 1.1e-18 | 67.2 | 9.9e-11 | 2.5e-07 | 31.0 |
| pfu_aug2.0_344.1_14022.t1 | 4 | 3 | Ank_5 | 167 | 217 | 7.3e-22 | 76.8 | 2.0e-10 | 5.0e-07 | 29.7 |
| pfu_aug2.0_344.1_14022.t1 | 3 | 2 | Ank_2 | 177 | 229 | 3.3e-33 | 113.8 | 1.3e-14 | 3.3e-11 | 43.3 |
| pfu_aug2.0_344.1_14022.t1 | 5 | 4 | Ank | 178 | 208 | 5.3e-31 | 104.8 | 1.3e-11 | 3.3e-08 | 32.9 |
| pfu_aug2.0_344.1_14022.t1 | 5 | 4 | Ank_3 | 178 | 204 | 1.5e-21 | 74.2 | 2.5e-08 | 6.1e-05 | 22.8 |
| pfu_aug2.0_344.1_14022.t1 | 3 | 3 | Ank_4 | 178 | 229 | 1.1e-18 | 67.2 | 2.1e-10 | 5.2e-07 | 30.0 |
| pfu_aug2.0_344.1_14022.t1 | 4 | 4 | Ank_5 | 196 | 230 | 7.3e-22 | 76.8 | 4.1e-07 | 0.001 | 19.2 |
| pfu_aug2.0_344.1_14022.t1 | 5 | 5 | Ank | 211 | 229 | 5.3e-31 | 104.8 | 0.039 | 96.0 | 3.0 |
| pfu_aug2.0_344.1_14022.t1 | 5 | 5 | Ank_3 | 211 | 229 | 1.5e-21 | 74.2 | 0.0019 | 4.7 | 7.7 |
| pfu_aug2.0_344.1_14022.t1 | 3 | 3 | Ank_2 | 364 | 364 | 3.3e-33 | 113.8 | 1.5 | 3600.0 | -1.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_344.1_14022.t1 | gi|586447070|ref|XP_006831721.1| | PREDICTED: GA-binding protein subunit beta-1 isoform X2 [Chrysochloris asiatica] | 0.0 |
| pfu_aug2.0_344.1_14022.t1 | gi|524914243|ref|XP_005111939.1| | PREDICTED: GA-binding protein subunit beta-1-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_344.1_14022.t1 | gi|586988977|ref|XP_006932590.1| | PREDICTED: GA-binding protein subunit beta-1 isoform X2 [Felis catus] | 0.0 |
| pfu_aug2.0_344.1_14022.t1 | gi|586988975|ref|XP_006932589.1| | PREDICTED: GA-binding protein subunit beta-1 isoform X1 [Felis catus] | 0.0 |
| pfu_aug2.0_344.1_14022.t1 | gi|562882560|ref|XP_006168830.1| | PREDICTED: GA-binding protein subunit beta-1 isoform X8 [Tupaia chinensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_344.1_14022.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_344.1_14022.t1 atgtctgcatcactgggtgacgaagggttggacccagcattggttatatcgacagtagaggatactttaccggaacaggt ggttacatcttctcatgatttagttattctacccagtcatcagcagttggcaaagttcaccactcaggaaataccaaaag tagctgccaaagaaaccatcatctttccaaaggcaccttccaagacatattactctaaaatgtcattggtcgatttaggt aaacgtctgttagatgctgccaagaggggcgagacagaagatgttagaaccttgatgtccaatggggctccctttactac agactggttaggaacatctcccttacactttgcctctcagtttggtcatgtagatacagcagaggttctattgagagcag ggataagtagggacgctcgtactaaggtagacagaacgccactccacgtggcatcacaggaaggtcatgtggatattgtg gagctactcatagcacactccgctgatgtggatgccaaagacatgttaaagatgacaccattacactgggccacagagaa gggtcatcctcttgtgatggagacactaattaaacatggagcagatgtcaactgtgaaaacaagtttgacagaacaccta tagatattgccattgtaaatggccgtgcagatttagcagaaatcctccagctagctatgcacacccagataggagcaatg atggacacagtgacagtgtcaacagatggagaagtagaaactaacaacattgagactgttaccgtcacaacatcggacgt tgcagcctcggaatcagaagagacgacagatcagaccaattcctctgtgttagctaccctagctgccttagcagaagcta cagcacctaactctggatcacaagccagtgccaatgccacagacactgttagttggttagagagccaaggaataaccatg attactacaaccgatggtggaattatatcatcagccatggaaagtgggcaatcactggcactcactgaggctggtaagat agcattgaccaacatcattaagcagcaaggtctacaaacagaggatgggatggtcgttacacatgaggatatagtggaag gagatgaagctttacataatatagaggaggcagatagtgaaaaagtgatcactataatgcctgagaacaatggagatgag gcagaggaggctgttatagagaatatagaaataggagctggtgatgcctcagaaaatctggattccacagatgaaccacc acagaagaagctgaaatctgatattaaagaagaaagtttggattcatatgaaaaagacgatctgaaacgacagttagagg aaatgcagaagcaggctgagacttacaaactgcagctcaaacaaaaagaaatagaggcagaggagtataaaaagaagtta aacgaaagtatgggtgacactgaagctggggagagtggtgattga |
|
Protein
| Protein ID | pfu_aug2.0_344.1_14022.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_344.1_14022.t1 MSASLGDEGLDPALVISTVEDTLPEQVVTSSHDLVILPSHQQLAKFTTQEIPKVAAKETIIFPKAPSKTYYSKMSLVDLG KRLLDAAKRGETEDVRTLMSNGAPFTTDWLGTSPLHFASQFGHVDTAEVLLRAGISRDARTKVDRTPLHVASQEGHVDIV ELLIAHSADVDAKDMLKMTPLHWATEKGHPLVMETLIKHGADVNCENKFDRTPIDIAIVNGRADLAEILQLAMHTQIGAM MDTVTVSTDGEVETNNIETVTVTTSDVAASESEETTDQTNSSVLATLAALAEATAPNSGSQASANATDTVSWLESQGITM ITTTDGGIISSAMESGQSLALTEAGKIALTNIIKQQGLQTEDGMVVTHEDIVEGDEALHNIEEADSEKVITIMPENNGDE AEEAVIENIEIGAGDASENLDSTDEPPQKKLKSDIKEESLDSYEKDDLKRQLEEMQKQAETYKLQLKQKEIEAEEYKKKL NESMGDTEAGESGD |
|