Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_344.1_14027
Locus scaffold344.1 : 166481 ... 175559 : +
To GenomeBrowser scaffold344.1:166481..175559
Genes list of scaffold scaffold344.1
Synonym pfu_aug1.0_1261.1_15410

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_344.1_14027.t1 21 1 DSL 55 66 3.8e-10 39.5 3.3 9700.0 -3.4
pfu_aug2.0_344.1_14027.t1 21 2 DSL 180 198 3.8e-10 39.5 0.0094 28.0 4.8
pfu_aug2.0_344.1_14027.t1 23 1 EGF_2 189 207 7.9e-16 57.9 0.4 1200.0 -0.3
pfu_aug2.0_344.1_14027.t1 21 3 DSL 197 237 3.8e-10 39.5 2.4e-08 7.1e-05 22.7
pfu_aug2.0_344.1_14027.t1 23 2 EGF_2 210 237 7.9e-16 57.9 1.4 4100.0 -2.0
pfu_aug2.0_344.1_14027.t1 21 4 DSL 226 266 3.8e-10 39.5 6.6e-09 2.0e-05 24.5
pfu_aug2.0_344.1_14027.t1 23 1 EGF_CA 227 241 5.8e-39 131.8 5.0 15000.0 -4.5
pfu_aug2.0_344.1_14027.t1 22 1 EGF 228 245 0.0 248.2 5.0 15000.0 -4.2
pfu_aug2.0_344.1_14027.t1 23 3 EGF_2 246 266 7.9e-16 57.9 0.015 43.0 4.3
pfu_aug2.0_344.1_14027.t1 21 5 DSL 255 295 3.8e-10 39.5 2.0e-08 5.8e-05 23.0
pfu_aug2.0_344.1_14027.t1 23 4 EGF_2 275 295 7.9e-16 57.9 0.017 51.0 4.1
pfu_aug2.0_344.1_14027.t1 21 6 DSL 283 326 3.8e-10 39.5 0.0013 3.8 7.5
pfu_aug2.0_344.1_14027.t1 22 2 EGF 286 324 0.0 248.2 0.0012 3.5 7.6
pfu_aug2.0_344.1_14027.t1 23 5 EGF_2 308 326 7.9e-16 57.9 0.0013 3.8 7.7
pfu_aug2.0_344.1_14027.t1 23 2 EGF_CA 313 322 5.8e-39 131.8 5.0 15000.0 -14.8
pfu_aug2.0_344.1_14027.t1 21 7 DSL 314 365 3.8e-10 39.5 5.0 15000.0 -4.7
pfu_aug2.0_344.1_14027.t1 23 3 EGF_CA 329 361 5.8e-39 131.8 9.2e-11 2.7e-07 30.4
pfu_aug2.0_344.1_14027.t1 22 3 EGF 333 363 0.0 248.2 6.8e-10 2.0e-06 27.6
pfu_aug2.0_344.1_14027.t1 23 6 EGF_2 333 365 7.9e-16 57.9 3.5e-08 0.0001 22.3
pfu_aug2.0_344.1_14027.t1 21 8 DSL 351 402 3.8e-10 39.5 5.0 15000.0 -8.5
pfu_aug2.0_344.1_14027.t1 23 4 EGF_CA 368 398 5.8e-39 131.8 2.6e-07 0.00079 19.3
pfu_aug2.0_344.1_14027.t1 22 4 EGF 372 399 0.0 248.2 1.0e-06 0.003 17.4
pfu_aug2.0_344.1_14027.t1 23 7 EGF_2 372 402 7.9e-16 57.9 0.00031 0.92 9.7
pfu_aug2.0_344.1_14027.t1 23 5 EGF_CA 405 415 5.8e-39 131.8 0.069 210.0 2.0
pfu_aug2.0_344.1_14027.t1 23 6 EGF_CA 418 449 5.8e-39 131.8 3.5e-07 0.001 18.9
pfu_aug2.0_344.1_14027.t1 22 5 EGF 422 450 0.0 248.2 1.9e-10 5.7e-07 29.3
pfu_aug2.0_344.1_14027.t1 23 8 EGF_2 422 453 7.9e-16 57.9 9.1e-06 0.027 14.6
pfu_aug2.0_344.1_14027.t1 21 9 DSL 437 453 3.8e-10 39.5 5.0 15000.0 -5.6
pfu_aug2.0_344.1_14027.t1 21 10 DSL 440 491 3.8e-10 39.5 5.0 15000.0 -10.4
pfu_aug2.0_344.1_14027.t1 23 7 EGF_CA 456 487 5.8e-39 131.8 8.9e-11 2.6e-07 30.4
pfu_aug2.0_344.1_14027.t1 22 6 EGF 460 490 0.0 248.2 1.8e-09 5.4e-06 26.2
pfu_aug2.0_344.1_14027.t1 23 9 EGF_2 460 491 7.9e-16 57.9 1.9e-05 0.055 13.6
pfu_aug2.0_344.1_14027.t1 21 11 DSL 477 513 3.8e-10 39.5 5.0 15000.0 -6.6
pfu_aug2.0_344.1_14027.t1 23 8 EGF_CA 494 525 5.8e-39 131.8 4.0e-05 0.12 12.4
pfu_aug2.0_344.1_14027.t1 22 7 EGF 498 527 0.0 248.2 1.1e-10 3.1e-07 30.2
pfu_aug2.0_344.1_14027.t1 23 10 EGF_2 498 529 7.9e-16 57.9 0.0017 5.0 7.3
pfu_aug2.0_344.1_14027.t1 21 12 DSL 516 566 3.8e-10 39.5 5.0 15000.0 -6.9
pfu_aug2.0_344.1_14027.t1 22 8 EGF 538 563 0.0 248.2 3.3e-08 9.9e-05 22.2
pfu_aug2.0_344.1_14027.t1 23 9 EGF_CA 538 566 5.8e-39 131.8 0.0076 23.0 5.0
pfu_aug2.0_344.1_14027.t1 23 11 EGF_2 538 566 7.9e-16 57.9 0.0029 8.6 6.6
pfu_aug2.0_344.1_14027.t1 23 10 EGF_CA 569 578 5.8e-39 131.8 0.13 390.0 1.1
pfu_aug2.0_344.1_14027.t1 22 9 EGF 573 581 0.0 248.2 0.81 2400.0 -1.4
pfu_aug2.0_344.1_14027.t1 21 13 DSL 577 587 3.8e-10 39.5 0.08 240.0 1.8
pfu_aug2.0_344.1_14027.t1 23 12 EGF_2 578 587 7.9e-16 57.9 0.64 1900.0 -0.9
pfu_aug2.0_344.1_14027.t1 23 11 EGF_CA 590 621 5.8e-39 131.8 5.5e-10 1.6e-06 27.9
pfu_aug2.0_344.1_14027.t1 23 13 EGF_2 594 625 7.9e-16 57.9 0.04 120.0 2.9
pfu_aug2.0_344.1_14027.t1 22 10 EGF 598 623 0.0 248.2 3.5e-08 0.0001 22.1
pfu_aug2.0_344.1_14027.t1 21 14 DSL 606 627 3.8e-10 39.5 5.0 15000.0 -5.4
pfu_aug2.0_344.1_14027.t1 23 12 EGF_CA 629 662 5.8e-39 131.8 0.00015 0.44 10.5
pfu_aug2.0_344.1_14027.t1 22 11 EGF 632 662 0.0 248.2 2.7e-08 8.0e-05 22.5
pfu_aug2.0_344.1_14027.t1 23 14 EGF_2 632 663 7.9e-16 57.9 0.023 68.0 3.7
pfu_aug2.0_344.1_14027.t1 21 15 DSL 649 700 3.8e-10 39.5 5.0 15000.0 -8.3
pfu_aug2.0_344.1_14027.t1 22 12 EGF 669 697 0.0 248.2 1.4e-09 4.1e-06 26.6
pfu_aug2.0_344.1_14027.t1 23 13 EGF_CA 673 696 5.8e-39 131.8 0.0092 27.0 4.8
pfu_aug2.0_344.1_14027.t1 23 15 EGF_2 673 700 7.9e-16 57.9 2.1e-06 0.0063 16.6
pfu_aug2.0_344.1_14027.t1 23 14 EGF_CA 703 742 5.8e-39 131.8 2.1e-08 6.3e-05 22.8
pfu_aug2.0_344.1_14027.t1 22 13 EGF 707 730 0.0 248.2 0.18 550.0 0.6
pfu_aug2.0_344.1_14027.t1 23 16 EGF_2 707 733 7.9e-16 57.9 0.055 160.0 2.5
pfu_aug2.0_344.1_14027.t1 22 14 EGF 732 762 0.0 248.2 2.3e-08 6.7e-05 22.7
pfu_aug2.0_344.1_14027.t1 23 17 EGF_2 732 763 7.9e-16 57.9 4.3e-05 0.13 12.4
pfu_aug2.0_344.1_14027.t1 23 15 EGF_CA 737 769 5.8e-39 131.8 1.1 3300.0 -1.9
pfu_aug2.0_344.1_14027.t1 21 16 DSL 737 752 3.8e-10 39.5 5.0 15000.0 -4.8
pfu_aug2.0_344.1_14027.t1 21 17 DSL 752 782 3.8e-10 39.5 5.0 15000.0 -4.0
pfu_aug2.0_344.1_14027.t1 23 16 EGF_CA 767 796 5.8e-39 131.8 1.8 5200.0 -2.5
pfu_aug2.0_344.1_14027.t1 22 15 EGF 776 792 0.0 248.2 4.0 12000.0 -3.7
pfu_aug2.0_344.1_14027.t1 21 18 DSL 780 825 3.8e-10 39.5 5.0 15000.0 -5.3
pfu_aug2.0_344.1_14027.t1 22 16 EGF 795 822 0.0 248.2 0.00044 1.3 9.0
pfu_aug2.0_344.1_14027.t1 23 17 EGF_CA 798 821 5.8e-39 131.8 0.45 1300.0 -0.6
pfu_aug2.0_344.1_14027.t1 23 18 EGF_2 799 825 7.9e-16 57.9 0.33 970.0 0.0
pfu_aug2.0_344.1_14027.t1 22 17 EGF 825 860 0.0 248.2 1.1e-08 3.4e-05 23.6
pfu_aug2.0_344.1_14027.t1 23 18 EGF_CA 830 858 5.8e-39 131.8 0.00015 0.45 10.5
pfu_aug2.0_344.1_14027.t1 23 19 EGF_2 831 862 7.9e-16 57.9 1.8e-05 0.054 13.6
pfu_aug2.0_344.1_14027.t1 21 19 DSL 837 862 3.8e-10 39.5 5.0 15000.0 -7.2
pfu_aug2.0_344.1_14027.t1 23 19 EGF_CA 866 900 5.8e-39 131.8 3.2e-06 0.0095 15.9
pfu_aug2.0_344.1_14027.t1 22 18 EGF 868 899 0.0 248.2 7.3e-11 2.2e-07 30.7
pfu_aug2.0_344.1_14027.t1 23 20 EGF_2 868 900 7.9e-16 57.9 6.0e-07 0.0018 18.4
pfu_aug2.0_344.1_14027.t1 21 20 DSL 879 937 3.8e-10 39.5 2.4 7100.0 -2.9
pfu_aug2.0_344.1_14027.t1 22 19 EGF 903 935 0.0 248.2 9.6e-09 2.8e-05 23.9
pfu_aug2.0_344.1_14027.t1 23 20 EGF_CA 904 933 5.8e-39 131.8 6.6e-05 0.2 11.7
pfu_aug2.0_344.1_14027.t1 23 21 EGF_2 906 937 7.9e-16 57.9 7.8e-06 0.023 14.8
pfu_aug2.0_344.1_14027.t1 22 20 EGF 943 972 0.0 248.2 4.3e-08 0.00013 21.8
pfu_aug2.0_344.1_14027.t1 23 21 EGF_CA 946 972 5.8e-39 131.8 0.0017 5.0 7.1
pfu_aug2.0_344.1_14027.t1 23 22 EGF_2 947 973 7.9e-16 57.9 0.00026 0.77 9.9
pfu_aug2.0_344.1_14027.t1 21 21 DSL 950 1009 3.8e-10 39.5 5.0 15000.0 -6.7
pfu_aug2.0_344.1_14027.t1 22 21 EGF 979 1005 0.0 248.2 6.3e-08 0.00019 21.3
pfu_aug2.0_344.1_14027.t1 23 22 EGF_CA 982 1007 5.8e-39 131.8 0.3 880.0 0.0
pfu_aug2.0_344.1_14027.t1 23 23 EGF_2 984 1009 7.9e-16 57.9 0.0061 18.0 5.5
pfu_aug2.0_344.1_14027.t1 23 23 EGF_CA 1012 1041 5.8e-39 131.8 1.8e-09 5.4e-06 26.2
pfu_aug2.0_344.1_14027.t1 22 22 EGF 1030 1040 0.0 248.2 0.062 180.0 2.1

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_344.1_14027.t1 gi|585673793|ref|XP_006818479.1| PREDICTED: neurogenic locus notch homolog protein 1-like, partial [Saccoglossus kowalevskii] 0.0
pfu_aug2.0_344.1_14027.t1 gi|390365181|ref|XP_788034.3| 0.0

Transcript
Transcript IDpfu_aug2.0_344.1_14027.t1
Definition-
>pfu_aug2.0_344.1_14027.t1
atgaaaagaccaatcgcaattttcactttttggtttctattcatcattcaggtaaaaggagacgattacatatctattga
tattaaacattatgaaaacctccggaaccaagttctgcgcatgcacagtcctcctgctgtttgctgcgggagtctaaaga
gatctgacaattgtacgcaactctgtgacccaagcattcatttttgtctgacatcagataagagtatggagaagaagtgc
gtgcgagagttatcaagctccgatattggtcaagtacagtcaagagattttggactttctgttggcaaccttagtaatcc
agtagtttttcgtttcaagaattggaagtttgaggaagtaaacacagtggtagtgacggtgaggaacaacgaatctgaat
cagatagtatcgtgttagcacgggttcacctcaatgtcataccgtaccataattactctagtgctgtggaggtggtccag
accggcagagatgtcaatacacaagcaagcttaaagtttggtgcaatgttctattcctgcgatccatcaaccgataatca
tgtcacgtgcaacgaaaaaggacttccaaaatgtggtccgaatttctacggaccagcctgcaacatattctgcaacgcaa
cagaagaccaccaaagttgtgattcgaaaggaaagcttacttgtgatccaaattattacggtgaaaactgtacaattgtt
tgcaagccgactgcaaagggaaaatgtgacgagaacggtacactggtttgtgaaaaagattactacggacaagactgttc
ggtgcattgtatttcaagtactcaaggatcgtgcttaagcaacggaacattggtttgcaacaaagactggcatggaccaa
attgcactgagcagttttgtcaaaacaacggattgctcatagttgacaaaaaggggaggaggtgcgcttgtcccaacggg
tttaatggtacacgctgtgaacatgatatcaacgaatgtgacgatcctacaagctgtcagaataatggaacctgcaaaaa
cctacccggaacgtatatctgtatttgcatagatggatggacgggtaaagcatgtgaaaaagatattgatgagtgttcga
ataacccttgtgttcatgctaactgcacaaatttacctggacaattcagatgtgactgttacgatggatgggagggaacg
ctatgtgaaaaggacatcgatgaatgttatacgggtagatattgtgatgtggacatcaatgaatgttcgagcaacccatg
tcagaacggcgcctcgtgtgttgaccagacgaatggatttcaatgcaagtgttcgagtggctggaatggtaccttatgtg
acaaagacatcgatgaatgcgaagatgaacaatgttctggacatggtacatgcgtcaatacagatggaagtttctattgt
aattgttctcatggatacttcggaaagaactgtagcagcgacaaagatgaatgtgcttcacagccgtgtctgcataatgg
aacttgtaacgatggtgtgaatagctttacatgcaactgccctgagaggtatactggccagttttgtgaatatcaaaact
attgtcactttcacccttgtaaaaacaatgctacgtgcgaaaataggaacacagaatttttttgcaagtgttctaatggc
tggaaaggattgtcttgtgaagacgacatcgatgaatgttcatcctctccgtgtattcatggatggaacggcacaaactg
tgatatggacattaatgaatgtactggtgtcaatccatgcaagaacgggacatgccaaaatatggagggttcgtttcatt
gcaactgtcataaaggttatacaggacgcttgtgtgaaacagaaatcgatgaatgtgcctctgacccatgtatgcatgga
gggtcgtgtcaggatggcatcaactcttacaactgttcatgtccgtatcggtatactggacagaactgtgagtacgagga
ctactgtctatacagcccatgcagaaacaatggaacttgtgtagaaaatgccactgaattttattgtacctgtccgtcag
gttggtctgggctagcatgtgaagtcgatatagatgaatgtagtggtaactcatctgtctgtaatggtaatgatagctgc
caaaatacaccaggatcgtacatctgtcatacctgcaattcctcatattgtaagaatggaggatcgtgtgtgatgggaaa
gcatggacctgaatgcaaatgtcccgacaactatgctggcaaaacctgcacagataaaaatcattgctttggctatggtt
cacaaccctgtggacatctacaatgtacaaattaccccgatggattcacctgtcatgacctgtgcttgagtaatccatgc
atgaacggacactgttatatggccaatggatcagttagttgcaactgcacaactggtttcagaggaaatttatgtagttt
aaacgacagctgtgctggtagtccgtgccaaaataatggtacgtgctcaaacgatggaaactcctataactgttcctgtc
caaatggtttcgagggtaaaatgtgtgaaatagtggacgtctgctcacagagtcatccatgcgcaaataatgccacgtgt
ataaacacggctgtaaattacacttgtgagtgttcgcatggctggacgggtccaacatgcaacgaaactgattactgcgc
tgacataccttgtcagaacaacggaacatgtataaatggagctaatgggtacaactgtacttgttccacaggatgggtcg
gtgcacagtgccattttgaagacttttgtctcgcaaagccttgccataacggttcttgtaccaaccgtaatgacacgtac
aagtgttcgtgtgacacaggatttgccggtgaaaattgtagtaacattgattattgtcttccaaacccttgtatacacgg
ttcctgtattacacttccagcaacacattattgcttttgcaacaagggctacaagaatgaaaactgttcagaggacattg
acgaatgtacagacagaatagataattgtcccgctcacctcggcttgacttgcagaaatacagatggcgcctacgaatgt
gtacctcatagcaaacacaagagaatgtcaagaggaaatgcattcactgcagataatgaaggaaggtatcgtgtcctgaa
tatcagtgaagtaataacagacgacaatggaagccatttcgtaagagcatctcgggatatcacaaccagatatatttgta
agaatgcaagcactgtcacaattgatctacatcaggtgcaaatcattgtcagtgagaagaggacagtcgtacacttggca
gtactttgtggagacaaagatgtgaccagtttgtttttggattacgttaacatgcaaaatatacatctagtgtag

Protein
Protein IDpfu_aug2.0_344.1_14027.t1
Definition-
>pfu_aug2.0_344.1_14027.t1
MKRPIAIFTFWFLFIIQVKGDDYISIDIKHYENLRNQVLRMHSPPAVCCGSLKRSDNCTQLCDPSIHFCLTSDKSMEKKC
VRELSSSDIGQVQSRDFGLSVGNLSNPVVFRFKNWKFEEVNTVVVTVRNNESESDSIVLARVHLNVIPYHNYSSAVEVVQ
TGRDVNTQASLKFGAMFYSCDPSTDNHVTCNEKGLPKCGPNFYGPACNIFCNATEDHQSCDSKGKLTCDPNYYGENCTIV
CKPTAKGKCDENGTLVCEKDYYGQDCSVHCISSTQGSCLSNGTLVCNKDWHGPNCTEQFCQNNGLLIVDKKGRRCACPNG
FNGTRCEHDINECDDPTSCQNNGTCKNLPGTYICICIDGWTGKACEKDIDECSNNPCVHANCTNLPGQFRCDCYDGWEGT
LCEKDIDECYTGRYCDVDINECSSNPCQNGASCVDQTNGFQCKCSSGWNGTLCDKDIDECEDEQCSGHGTCVNTDGSFYC
NCSHGYFGKNCSSDKDECASQPCLHNGTCNDGVNSFTCNCPERYTGQFCEYQNYCHFHPCKNNATCENRNTEFFCKCSNG
WKGLSCEDDIDECSSSPCIHGWNGTNCDMDINECTGVNPCKNGTCQNMEGSFHCNCHKGYTGRLCETEIDECASDPCMHG
GSCQDGINSYNCSCPYRYTGQNCEYEDYCLYSPCRNNGTCVENATEFYCTCPSGWSGLACEVDIDECSGNSSVCNGNDSC
QNTPGSYICHTCNSSYCKNGGSCVMGKHGPECKCPDNYAGKTCTDKNHCFGYGSQPCGHLQCTNYPDGFTCHDLCLSNPC
MNGHCYMANGSVSCNCTTGFRGNLCSLNDSCAGSPCQNNGTCSNDGNSYNCSCPNGFEGKMCEIVDVCSQSHPCANNATC
INTAVNYTCECSHGWTGPTCNETDYCADIPCQNNGTCINGANGYNCTCSTGWVGAQCHFEDFCLAKPCHNGSCTNRNDTY
KCSCDTGFAGENCSNIDYCLPNPCIHGSCITLPATHYCFCNKGYKNENCSEDIDECTDRIDNCPAHLGLTCRNTDGAYEC
VPHSKHKRMSRGNAFTADNEGRYRVLNISEVITDDNGSHFVRASRDITTRYICKNASTVTIDLHQVQIIVSEKRTVVHLA
VLCGDKDVTSLFLDYVNMQNIHLV

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495