Gene
| Gene Model ID | pfu_aug2.0_344.1_14028 |
|---|---|
| Locus | scaffold344.1 : 178581 ... 220310 : - |
| To GenomeBrowser | scaffold344.1:178581..220310 |
| Genes list of scaffold | scaffold344.1 |
| Synonym | pfu_aug1.0_1261.1_15411 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_344.1_14028.t1 | 5 | 1 | RRM_5 | 463 | 501 | 1.3e-07 | 31.2 | 0.00022 | 0.46 | 10.3 |
| pfu_aug2.0_344.1_14028.t1 | 4 | 1 | RRM_6 | 463 | 503 | 9.3e-06 | 25.5 | 8.8e-05 | 0.19 | 11.7 |
| pfu_aug2.0_344.1_14028.t1 | 4 | 2 | RRM_6 | 522 | 587 | 9.3e-06 | 25.5 | 0.34 | 730.0 | 0.2 |
| pfu_aug2.0_344.1_14028.t1 | 5 | 2 | RRM_5 | 556 | 588 | 1.3e-07 | 31.2 | 0.0015 | 3.1 | 7.7 |
| pfu_aug2.0_344.1_14028.t1 | 4 | 3 | RRM_6 | 602 | 663 | 9.3e-06 | 25.5 | 0.0079 | 17.0 | 5.5 |
| pfu_aug2.0_344.1_14028.t1 | 5 | 3 | RRM_5 | 625 | 668 | 1.3e-07 | 31.2 | 0.16 | 340.0 | 1.1 |
| pfu_aug2.0_344.1_14028.t1 | 4 | 1 | Macro | 828 | 863 | 0.0 | 211.8 | 3.0 | 6300.0 | -3.0 |
| pfu_aug2.0_344.1_14028.t1 | 5 | 4 | RRM_5 | 920 | 938 | 1.3e-07 | 31.2 | 0.0073 | 15.0 | 5.4 |
| pfu_aug2.0_344.1_14028.t1 | 4 | 4 | RRM_6 | 922 | 938 | 9.3e-06 | 25.5 | 0.14 | 290.0 | 1.5 |
| pfu_aug2.0_344.1_14028.t1 | 4 | 2 | Macro | 1218 | 1333 | 0.0 | 211.8 | 1.7e-33 | 3.6e-30 | 104.2 |
| pfu_aug2.0_344.1_14028.t1 | 5 | 5 | RRM_5 | 1250 | 1263 | 1.3e-07 | 31.2 | 5.9 | 13000.0 | -3.9 |
| pfu_aug2.0_344.1_14028.t1 | 4 | 3 | Macro | 1439 | 1552 | 0.0 | 211.8 | 1.4e-18 | 3.0e-15 | 56.1 |
| pfu_aug2.0_344.1_14028.t1 | 4 | 4 | Macro | 1655 | 1762 | 0.0 | 211.8 | 4.9e-16 | 1.0e-12 | 47.9 |
| pfu_aug2.0_344.1_14028.t1 | 2 | 1 | PARP | 1692 | 1714 | 1.4e-29 | 103.0 | 1.6 | 3500.0 | -2.8 |
| pfu_aug2.0_344.1_14028.t1 | 2 | 2 | PARP | 2053 | 2225 | 1.4e-29 | 103.0 | 3.1e-32 | 6.5e-29 | 100.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_344.1_14028.t1 | gi|591364426|ref|XP_007057113.1| | PREDICTED: poly [ADP-ribose] polymerase 14-like [Chelonia mydas] | 0.0 |
| pfu_aug2.0_344.1_14028.t1 | gi|641760803|ref|XP_008166082.1| | PREDICTED: uncharacterized protein LOC101949947 [Chrysemys picta bellii] | 0.0 |
| pfu_aug2.0_344.1_14028.t1 | gi|260828141|ref|XP_002609022.1| | hypothetical protein BRAFLDRAFT_84838 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_344.1_14028.t1 | gi|410927688|ref|XP_003977273.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_344.1_14028.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_344.1_14028.t1 atgatagaagagaggaagaagactggggtatggggatttgttgatgatggagatatcacccgagtacatgttaaagtttt gtctacggacgacgacgacgacgacgacgacaacgacgccgaggatgcctcttgcattcttcgtcaaacgtctattacac tgagcttattcagcggtggtacagtgacggtatctgtaggtaaatgtccggaggatattataccagaggaatggctcgat gatgcagatcttacctggtcaaagacaaatcataagagagaaccatcatcagttgatcacacatttagcaacaatggaag tttgtcatcgaatacccagtcagagcctgtcaatggccaggaccaatctcaacgggaatgtggctctcctgatgtgtttg attggggtacttcaggtctgactacttcatcagagagaaatggagagacatcaagcttggtggacggtcccaatccaaca aatcaaagtgggcccgcttacttaccaaagaacactcattctggtgattttactgtctatcaaaatgcagagactttcat tataaggactgaggctttacaagagccaataaatgaagtacctcctaaattgccagagaggaaacctcatccgaagtcct cccattcctcctcaacctctgcctctgctcctcaaggaggaaaagtagagcctagtactgaggcctccttaagtaggcca ggatttcctgtttctggtcaacaagtaggacactctgtaccaccaagggaggaagtgatcagttctctacagtatggaaa atataatgaaagttttgttactgctcaagaaaattttgactctagccgaatatcagattgtttacctgaggcaccaggtg atagaggtcattttggcatgggtcaaggacctccggatcagccaccatatccttttcagccacagcagtttggacctaat ataatggtatgtccacctggaccaatgccccagccacctaattttgcctccggacctacgccctcactacctaactacca ttatggtatggggatgtatccaccctacggtcaagctcccctgaggccgccttttgagggagcttatcctactccacaag gaatctttcctgagccaggccaacttcgaagttcaggagactggaatcccgcctcatttccaccttataatcccccacaa caccaccctcaaccagcacctcccactgtaccagcagaaaaccttactgatccaaaaagtatagtattaagtgtgagtcc agtccctgacagtgaaggacaagcaaaaggtgtccccccaaaaagatcacctaagtcagcaactaggagtaagaaaacag aaaagaaaaaagaaaaaaaagaaaaaggtgagattgaggagattgatattgatcataagtcaaaggaagccatcatcaag tttgagagctccaaggttgcaaaaagagtactggagaaagcaaaatctcataagataggaaaagctgaggtgcaaatttt tgccttcaacccagagaaggagaacttctttgaggaaaaagtactgttggttactggcctgaaggacactacaaccactg aatgcctggagaattatttggaagctcgatgtgatgataatcttgaggaaatactgtatggagatgaaggagggaaggca gttgtcgtttttgagaaagctccagatttcaagaaacttattacagctatcaaggggaaatctctagagggtcaaaaact ggaagcatccagggtgaagcgatgccactcagtttgtgtgtgtggaatcgatggcaacattactgatgattgcttggaac ttttcttcgagaacaagaggcgaagtggtggagggcaagttgaacgtctagatttacaatatgatataggaatctgtatt gttttcttcaaaaattcttcagatgctgataacgtttggagaaatcatcgctctgttactgtgtcaggattaagtttaca agtgaagccttactacccctgtcttggattaccgagagagctggctcaggttactatagaaaagggtagcacacctcaaa taatgataaaagatctctcgtcatatgttgttcgttttttaagtacctctaaaagtttgaagggaaaatttgatgaagat ttaaaagggcacaatgccaaggtcatttggagtggtgctaaagatgcagacagcatggatatacattgtacatatcaagt aggtacaaaacttagcaaaaatacattagagaaatggaaggttgaagcagaaaaaattgtacgacaatttttagacgact ttactgctaaaaaattgcagagttctagtgacgcttggaaaagtttgattgagtttctgaggactgtttctatagatgag cctgacaaggttggggtaatacttgaaaaagaacaatgttgtgttgtggtggttggttggaaagataatgtagaaaaatt gggcaaagtaattcagaataatatcaaaaccagagaggaaaaaattgtagcaaagaagtcacacgttacgaaatcatgtt ccttacagccacatcaagtaatgatactggaaaggcttcagtttcacaaaaatacagccaaatctttcacagatgtggag gtgaagatgaatgccagtgaaaagacagttacatttaccggccccaaatcggaactggataaagctgttcttaaaatgca tgaaatactaaattcactaacgacaaagtctttcagtgtttctcaagtcttcatagaattgctggacaaggaagaagccc agaaagcggtacatgacacgttgaagtcaaggaagctccagtcagcctgggttacaaagccaaaagagacttctgtcgaa gtgtatggagtgaatccctctgagataaatcaagcaatgtcagctataagagataccttaccagaaaagaactttgatct taaagataatttacgcgagtttctaaggtcagaggaatggagaggctgcgttaaaaagcttacatctcattataacggga aaatggcaatagtatccagtgatcaattggtatcatttgcagccattacagacatcttcaattctgcatcagaagaaatt caaaaccaagtcgaagagtttactaggaagcactgctctgcctcagattttcttgcaaccaattcaggtagaatgaaatt tattacaacacacatggagcaagagttgacaaggataacaaagaaatttgaatctggtaatgtgaacatttcccctcgga ttatgggtagaggcaagactgggtttgttattaatggtgataagaatggcgttaaaaaagcaaagaaggaattggaagat atggttaaaagtatcatggaagagaaacataaaatttccgagcctggatgtgtcagattctttggttctgaggaaggaat caaagccaggcaaaaggtagaatctgataacaaatgtatcataaagaatactaaagaagactctgaggagcaaactgtga agagaggcggagaaaaatctgggaaaggtgctaattttaaacgtcctgaggaggtggccagttgtagcagtggtggtatg accatgaaagtcatggagggagatatgacacagttaagtgttgatggcattgtgaatgcagctaacaatgatttggatca ttgcggaggactggctaaagtcatcagtgatgcaggaggaccttctatacagaaagagtgcaataaatacatcaagaaat acggaaaggtgtcagatggagatgccatgtacagcagtccaggtcagttaccgtgtaagtggctcattcatgctgtcggt ccaagatggagcggaggtcatagaaatgaagaaatagacctacggaaagcaattacaaaatgtctggagctagcctcaga gaaaaatatgacattgttggccatacctgctctcagtgcaggaatatttggctaccctgttgatcaggcaaccagtgtga tcatcggaactattgtattctattttaagacaaaggaaggaaaggagtcatctttgaaagaaatctacctatgtggagtg gatgataagattatacgatcttttattcagtcattgcaaaacacgttaggctataagtcagttactgtgaagagaagaga aggggcatcatacaaggaagagagggattcaagtccaagaagagaaaggtcatattctccaaagaggaaggatgagggga aaagttacaagcgacaagggattgaggtcagacttattaaaggagaacttgcctcacaaaaggctgacgcccttgttaat tctgctcaccatagcttggacctcagtattggtgctacatccaagtctctcctcagagtaggcggtgataaagtacagga ggaatgtaagctaaagtaccgatcggggatcaaacctgggcaagtagctatcacaaaggggggagatctacagtgcagtc aggtgtaccatggtacactgcaaaaattcacaagagacaactatgaacaggcaatgcagacaatggaagattttgttggg aaatgtttagaaacagcagacacaaaccagctcaagtctatagcatttccagccctcggtacgggacagctgggatatcc tgccgatcttgtagcaggaacaatgtatagatgtatctctaagtttgagaaagacaacccttctacatcattggtggagg tacaattggtggtgtaccacaaagacactgctactattaaggcatttgagataaagagtaaatccaggtccacaggcgta acagatgatgactcagaaaggcaaagatctgcaccgacgcggggatatcaggacagagggcgctctagtcaaggggcatc atcaggaaggtcttccacagtcggtaaactggaggtcaagattctacagggaaacattactacagatggttctgatgcca tcgtgaacagtgtaggagagaggatggacctcagtaaaggtgctttgtccaaggccattcttaaagaaggaggctacaaa atacaggaggagtgtaagagtaaagtggaagacatgagacgagatggccttgtggtgactgctgccgggaaactaaggag taaatatattatccatgttaaagttcagagggaccaggattcatggaagaggacgatagccaaagctctggatgtagctg acacgaaacaatgcagaagtttagcatttcctgctttgggtacaggaggtcaaggttgcacgcctgaggatgtagctagg gcaatgttccgggccatacaatcgttctcaccaaggtcattacaggaagtcaacgtagtggtatatcaagaggatatggt tacctctttcaagcaagctatggactcggcaacagatggtgaaacaaaaaagagtgctcggctccaaattccctctacgg ttgattcagtagcatatccgaataaaatctatgttcgaattagcataaaagggatggtgctaagcttggtcttggatagn aaagaatcaaaacctcaacaatcagacgaggttgtttttttgttgtggtctgataaaagcaaagatctgaagagagccac taaagatctagatgaaatagtgagacgagaatgctgtcaggagaaaataaaacgggaagctcttgtcaagaaactaaatg acaagcagaaaagccatatcaccagtgttggcagacagaatggagttgtaattaacataaatacaagtaaaggagagata gtgctacaaggccaggaaagggacgtaacgagatctaaagccgacatactagaactactcagtgatatcgataaacacat gaacgagtatgataaagctgaagccatgtgtaaatatgtacagtggcagtttaaagacggcagcaaatggaagaacacta atccaatgatgaatatgtacatagaggaagcccaccaggccaaaaaagcaaaagtgacggtgaaagacagatctggtgaa gagtacgaaattgacctgaagaaaaatgaagagtatgagaaaaagaatccatcaaagaaatatgaaatacgacgctctga tgtaggaagcagaggtaccaatgttgttggtcttcctgagagatgggaccctggtcaggatatcaaggaggtagagctta aaccaggatctggagagtataaaaaagtgatggaagaattcacgaaaaaaggaggaccaaattccgtaaagaaaatttac agagtacagaatccccacctgtaccaacaatacgcagctaagcggaaatccattctagaaagaaatggtaaaaatcctga gcgatggttgtggcatggtacttcagcagataccataaagttcatcatcaacaatggattcaatagaagttactgtggta aaaatggtacagcatttggaaatggtgtatattttgccgtggactcttcatattcagttggatattgtactgtagatcag catgggtgtaatcacatgttttctgctcaagttttggttggggaaacctgtaaaggacatggtggtatgacagtactacc cccaaaacctggaggaaaggaatttgagacatacgattctgcatcaaacaatccgtcttcccctagcatgtacattatat tccatgatagccaggcatatccaacctatcacattatagtgtttcacaaagacatcttgttttaa |
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Protein
| Protein ID | pfu_aug2.0_344.1_14028.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_344.1_14028.t1 MIEERKKTGVWGFVDDGDITRVHVKVLSTDDDDDDDDNDAEDASCILRQTSITLSLFSGGTVTVSVGKCPEDIIPEEWLD DADLTWSKTNHKREPSSVDHTFSNNGSLSSNTQSEPVNGQDQSQRECGSPDVFDWGTSGLTTSSERNGETSSLVDGPNPT NQSGPAYLPKNTHSGDFTVYQNAETFIIRTEALQEPINEVPPKLPERKPHPKSSHSSSTSASAPQGGKVEPSTEASLSRP GFPVSGQQVGHSVPPREEVISSLQYGKYNESFVTAQENFDSSRISDCLPEAPGDRGHFGMGQGPPDQPPYPFQPQQFGPN IMVCPPGPMPQPPNFASGPTPSLPNYHYGMGMYPPYGQAPLRPPFEGAYPTPQGIFPEPGQLRSSGDWNPASFPPYNPPQ HHPQPAPPTVPAENLTDPKSIVLSVSPVPDSEGQAKGVPPKRSPKSATRSKKTEKKKEKKEKGEIEEIDIDHKSKEAIIK FESSKVAKRVLEKAKSHKIGKAEVQIFAFNPEKENFFEEKVLLVTGLKDTTTTECLENYLEARCDDNLEEILYGDEGGKA VVVFEKAPDFKKLITAIKGKSLEGQKLEASRVKRCHSVCVCGIDGNITDDCLELFFENKRRSGGGQVERLDLQYDIGICI VFFKNSSDADNVWRNHRSVTVSGLSLQVKPYYPCLGLPRELAQVTIEKGSTPQIMIKDLSSYVVRFLSTSKSLKGKFDED LKGHNAKVIWSGAKDADSMDIHCTYQVGTKLSKNTLEKWKVEAEKIVRQFLDDFTAKKLQSSSDAWKSLIEFLRTVSIDE PDKVGVILEKEQCCVVVVGWKDNVEKLGKVIQNNIKTREEKIVAKKSHVTKSCSLQPHQVMILERLQFHKNTAKSFTDVE VKMNASEKTVTFTGPKSELDKAVLKMHEILNSLTTKSFSVSQVFIELLDKEEAQKAVHDTLKSRKLQSAWVTKPKETSVE VYGVNPSEINQAMSAIRDTLPEKNFDLKDNLREFLRSEEWRGCVKKLTSHYNGKMAIVSSDQLVSFAAITDIFNSASEEI QNQVEEFTRKHCSASDFLATNSGRMKFITTHMEQELTRITKKFESGNVNISPRIMGRGKTGFVINGDKNGVKKAKKELED MVKSIMEEKHKISEPGCVRFFGSEEGIKARQKVESDNKCIIKNTKEDSEEQTVKRGGEKSGKGANFKRPEEVASCSSGGM TMKVMEGDMTQLSVDGIVNAANNDLDHCGGLAKVISDAGGPSIQKECNKYIKKYGKVSDGDAMYSSPGQLPCKWLIHAVG PRWSGGHRNEEIDLRKAITKCLELASEKNMTLLAIPALSAGIFGYPVDQATSVIIGTIVFYFKTKEGKESSLKEIYLCGV DDKIIRSFIQSLQNTLGYKSVTVKRREGASYKEERDSSPRRERSYSPKRKDEGKSYKRQGIEVRLIKGELASQKADALVN SAHHSLDLSIGATSKSLLRVGGDKVQEECKLKYRSGIKPGQVAITKGGDLQCSQVYHGTLQKFTRDNYEQAMQTMEDFVG KCLETADTNQLKSIAFPALGTGQLGYPADLVAGTMYRCISKFEKDNPSTSLVEVQLVVYHKDTATIKAFEIKSKSRSTGV TDDDSERQRSAPTRGYQDRGRSSQGASSGRSSTVGKLEVKILQGNITTDGSDAIVNSVGERMDLSKGALSKAILKEGGYK IQEECKSKVEDMRRDGLVVTAAGKLRSKYIIHVKVQRDQDSWKRTIAKALDVADTKQCRSLAFPALGTGGQGCTPEDVAR AMFRAIQSFSPRSLQEVNVVVYQEDMVTSFKQAMDSATDGETKKSARLQIPSTVDSVAYPNKIYVRISIKGMVLSLVLDX KESKPQQSDEVVFLLWSDKSKDLKRATKDLDEIVRRECCQEKIKREALVKKLNDKQKSHITSVGRQNGVVININTSKGEI VLQGQERDVTRSKADILELLSDIDKHMNEYDKAEAMCKYVQWQFKDGSKWKNTNPMMNMYIEEAHQAKKAKVTVKDRSGE EYEIDLKKNEEYEKKNPSKKYEIRRSDVGSRGTNVVGLPERWDPGQDIKEVELKPGSGEYKKVMEEFTKKGGPNSVKKIY RVQNPHLYQQYAAKRKSILERNGKNPERWLWHGTSADTIKFIINNGFNRSYCGKNGTAFGNGVYFAVDSSYSVGYCTVDQ HGCNHMFSAQVLVGETCKGHGGMTVLPPKPGGKEFETYDSASNNPSSPSMYIIFHDSQAYPTYHIIVFHKDILF |
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