Gene
| Gene Model ID | pfu_aug2.0_344.1_14029 |
|---|---|
| Locus | scaffold344.1 : 220981 ... 248096 : + |
| To GenomeBrowser | scaffold344.1:220981..248096 |
| Genes list of scaffold | scaffold344.1 |
| Synonym | pfu_aug1.0_132423.1_13838 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| rho guanine nucleotide exchange factor 7 isoform x3 | GO:0005085 GO:0016043 GO:0035023 GO:0048522 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_344.1_14029.t3 | 2 | 1 | SH3_1 | 104 | 122 | 1.9e-14 | 52.7 | 0.92 | 2700.0 | -2.2 |
| pfu_aug2.0_344.1_14029.t3 | 1 | 1 | SH3_2 | 192 | 245 | 1.8e-14 | 52.9 | 1.7e-17 | 5.0e-14 | 51.5 |
| pfu_aug2.0_344.1_14029.t3 | 2 | 2 | SH3_1 | 194 | 239 | 1.9e-14 | 52.7 | 1.4e-17 | 4.2e-14 | 51.6 |
| pfu_aug2.0_344.1_14029.t3 | 1 | 1 | SH3_9 | 195 | 243 | 1.9e-15 | 56.1 | 1.3e-18 | 3.8e-15 | 55.1 |
| pfu_aug2.0_344.1_14029.t3 | 1 | 1 | RhoGEF | 284 | 456 | 1.4e-33 | 116.3 | 9.3e-37 | 2.7e-33 | 115.3 |
Transcript
| Transcript ID | pfu_aug2.0_344.1_14029.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_344.1_14029.t1 atggataagccaaaggaacatgatacacgacaaagaacagccagttcagagttatcaggggaatttgatcttattgttaa tgaaatcaatgattttattgctattttagaggaacgaggacagcagtttcaaaataaggaggcggaggcgaggttacaaa gtaaaagtaaggaggcggaggcgaggttacaaagtaaaagtaaggagtctgaggataggacagcaagtaaaagtaaagag gctgaattgaggacacagaaacctgagcgtgaggacaatgctttagaggctgtggacatatcggaggattctgaggactc ggaactgtctatttctccaaggaatactgtgattcatattgaggacaccgatttattcctcaccgaacaagagtcctcag agcctatttacgaatccttcgatgatgtgaaggaaaacgactatgaggctattaaaggaccacctcttaaggtcaaggca gtagccacagccaatttgatacctcaaaaaccggcactgaaaccaaaacctaaaaacctacataaaaccatggaaccaaa ccaacatactcgtagggtcaaagctttacataacttcaaaggaactaacaacgatgagctatgttttatgaagggggaca tcatcacagtgacccagactatggaaggagggtggtgggaaggaacattaaacggcaaaactggatggtttcctagcaac tatattaaagaaatccgagcagatatagtctccaccgagattccaggaggaaagcgatcatcaggtgctgttaagggctc agatgtacaggcctacaaacgggaaagcatgcaatattaccataatgtggtgttacaaaatgtgatagatacagagaaga ctcatgtccaagagttgaccacagtattacaaacttacatacagcctatccatagttctagcattttgagttcggcagag tacacacagttggtaggaaatcttgaggagattgttacattccagaacagcttcctttcatccctggaggattgtatgaa gcagcccccctatcagaggcgagtgggtggcgtctttatgaagcatgccccccgtcttaaggagttatatatggcttact ctgctaaccatccacgggcagcagctattctacaaaataaaagagatgatttaaacaagtttatggatagtcttggtgta agtaagggagctatgaccctgaccacaaatctatataaaccattcacacggctggataaataccccagcttactgaagga actggagaggcatgtagaggagagccacgtagatcgaggtgatactcagcgtgcaattgctgtgtacagggacattgcta atgcatgtatggaaattagaaagaccaaagagatggaatatgaaatattaacaagtgcaataaagggctgggagggggag gaaatcgccaaactaggggaggtgattcacttatctcaggtgcaagtccagacgttagccggagataaatttgatcgtat attcgtgttgttccctagcgtacttgtgatgttgtctatgagtccaagactcagtggttatcagtatgagggccagttgc cactaagtggtatgaatgtatgtctctgtgaaggtgaggagggggaacaagacaactcttttgaaatttcagggaatatg atagaaaaaataacagtaacctgtggcaccagaacagaggctgtagcctggatagattctctatcacaacaagttaatgt aactcagatctcaggcacaaccaaacctcagagtttacagctgaaaaacgattggagtgatccatatgaccctcgtacca tggaggaggatgcggtgatcctgaaagtaatagaagcttactgcagcgcacgtcggagaaatgacgtcaactcgttggat ttaaagaagctcaaagtgaacgaggatggcactatagaaggttacggagacatgataatctcccctgaatcggaggagta ccatatcctgcatggtaatcccggcatgattggtggattttgctgttcctttcccctggctaaagccatcgctaaagaaa aatttacgttggtacgaccattacctaaccctaacttaggcactatatccgagaccccacggcgagatgttgctgtgcaa gctctgcctaaagagacagttaatgtggtgaaaccccttcaggcagaaaattcaaacggtcaaactctcaaaagggacgt tggcattcaaggtattgtaggaatgctcttagattgtttgagaatgacaaaacatgtgatgtgtgatgtttacatgcacg atgtttttcaaaaatga |
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| Transcript ID | pfu_aug2.0_344.1_14029.t2 |
| Definition | - |
>pfu_aug2.0_344.1_14029.t2 atggataagccaaaggaacatgatacacgacaaagaacagccagttcagagttatcaggggaatttgatcttattgttaa tgaaatcaatgattttattgctattttagaggaacgaggacagcagtttcaaaataaggaggcggaggcgaggttacaaa gtaaaagtaaggaggcggaggcgaggttacaaagtaaaagtaaggagtctgaggataggacagcaagtaaaagtaaagag gctgaattgaggacacagaaacctgagcgtgaggacaatgctttagaggctgtggacatatcggaggattctgaggactc ggaactgtctatttctccaaggaatactgtgattcatattgaggacaccgatttattcctcaccgaacaagagtcctcag agcctatttacgaatccttcgatgatgtgaaggaaaacgactatgaggctattaaaggaccacctcttaaggtcaaggca gtagccacagccaatttgatacctcaaaaaccggcactgaaaccaaaacctaaaaacctacataaaaccatggaaccaaa ccaacatactcgtagggtcaaagctttacataacttcaaaggaactaacaacgatgagctatgttttatgaagggggaca tcatcacagtgacccagactatggaaggagggtggtgggaaggaacattaaacggcaaaactggatggtttcctagcaac tatattaaagaaatccgagcagatatagtctccaccgagattccaggaggaaagcgatcatcaggtgctgttaagggctc agatgtacaggcctacaaacgggaaagcatgcaatattaccataatgtggtgttacaaaatgtgatagatacagagaaga ctcatgtccaagagttgaccacagtattacaaacttacatacagcctatccatagttctagcattttgagttcggcagag tacacacagttggtaggaaatcttgaggagattgttacattccagaacagcttcctttcatccctggaggattgtatgaa gcagcccccctatcagaggcgagtgggtggcgtctttatgaagcatgccccccgtcttaaggagttatatatggcttact ctgctaaccatccacgggcagcagctattctacaaaataaaagagatgatttaaacaagtttatggatagtcttggtgta agtaagggagctatgaccctgaccacaaatctatataaaccattcacacggctggataaataccccagcttactgaagga actggagaggcatgtagaggagagccacgtagatcgaggtgatactcagcgtgcaattgctgtgtacagggacattgcta atgcatgtatggaaattagaaagaccaaagagatggaatatgaaatattaacaagtgcaataaagggctgggagggggag gaaatcgccaaactaggggaggtgattcacttatctcaggtgcaagtccagacgttagccggagataaatttgatcgtat attcgtgttgttccctagcgtacttgtgatgttgtctatgagtccaagactcagtggttatcagtatgagggccagttgc cactaagtggtatgaatgtatgtctctgtgaaggtgaggagggggaacaagacaactcttttgaaatttcagggaatatg atagaaaaaataacagtaacctgtggcaccagaacagaggctgtagcctggatagattctctatcacaacaagttaatgt aactcagatctcaggcacaaccaaacctcagagtttacagctgaaaaacgattggagtgatccatatgaccctcgtacca tggaggaggatgcggtgatcctgaaagtaatagaagcttactgcagcgcacgtcggagaaatgacgtcaactcgtccatc gctaaagaaaaatttacgttggtacgaccattacctaaccctaacttaggcactatatccgagaccccacggcgagatgt tgctgtgcaagctctgcctaaagagacagttaatgtggtgaaaccccttcaggcagaaaattcaaacggtcaaactctca aaagggacgttggcattcaaggtattgtaggaatgctcttagattgtttgagaatgacaaaacatgtgatgtgtgatgtt tacatgcacgatgtttttcaaaaatga |
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| Transcript ID | pfu_aug2.0_344.1_14029.t3 |
| Definition | - |
>pfu_aug2.0_344.1_14029.t3 atggataagccaaaggaacatgatacacgacaaagaacagccagttcagagttatcaggggaatttgatcttattgttaa tgaaatcaatgattttattgctattttagaggaacgaggacagcagtttcaaaataaggaggcggaggcgaggttacaaa gtaaaagtaaggaggcggaggcgaggttacaaagtaaaagtaaggagtctgaggataggacagcaagtaaaagtaaagag gctgaattgaggacacagaaacctgagcgtgaggacaatgctttagaggctgtggacatatcggaggattctgaggactc ggaactgtctatttctccaaggaatactgtgattcatattgaggacaccgatttattcctcaccgaacaagagtcctcag agcctatttacgaatccttcgatgatgtgaaggaaaacgactatgaggctattaaaggaccacctcttaaggtcaaggca gtagccacagccaatttgatacctcaaaaaccggcactgaaaccaaaacctaaaaacctacataaaaccatggaaccaaa ccaacatactcgtagggtcaaagctttacataacttcaaaggaactaacaacgatgagctatgttttatgaagggggaca tcatcacagtgacccagactatggaaggagggtggtgggaaggaacattaaacggcaaaactggatggtttcctagcaac tatattaaagaaatccgagcagatatagtctccaccgagattccaggaggaaagcgatcatcaggtgctgttaagggctc agatgtacaggcctacaaacgggaaagcatgcaatattaccataatgtggtgttacaaaatgtgatagatacagagaaga ctcatgtccaagagttgaccacagtattacaaacttacatacagcctatccatagttctagcattttgagttcggcagag tacacacagttggtaggaaatcttgaggagattgttacattccagaacagcttcctttcatccctggaggattgtatgaa gcagcccccctatcagaggcgagtgggtggcgtctttatgaagcatgccccccgtcttaaggagttatatatggcttact ctgctaaccatccacgggcagcagctattctacaaaataaaagagatgatttaaacaagtttatggatagtcttggtgta agtaagggagctatgaccctgaccacaaatctatataaaccattcacacggctggataaataccccagcttactgaagga actggagaggcatgtagaggagagccacgtagatcgaggtgatactcagcgtgcaattgctgtgtacagggacattgcta atgcatgtatggaaattagaaagaccaaagagatggaatatgaaatattaacaagtgcaataaagggctgggagggggag gaaatcgccaaactaggggaggtgattcacttatctcaggtgcaagtccagacgttagccggagataaatttgatcgtat attcgtgttgttccctagcgtacttgtgatgttgtctatgagtccaagactcagtggttatcagtatgagggccagttgc cactaagtggtatgaatgtatgtctctgtgaaggtgaggagggggaacaagacaactcttttgaaatttcagggaatatg atagaaaaaataacagtaacctgtggcaccagaacagaggctgtagcctggatagattctctatcacaacaagttaatgt aactcagatctcaggcacaaccaaacctcagagtttacagctgaaaaacgattggagtgatccatatgaccctcgtacca tggaggaggatgcggtgatcctgaaagtaatagaagcttactgcagcgcacgtcggagaaatgacgtcaactcgttgccg aattatttggatttaaagaagctcaaagtgaacgaggatggcactatagaaggttacggagacatgataatctcccctga atcggaggagtaccatatcctgcatggtaatcccggcatgattggtggattttgctgttcctttcccctggctaaagcca tcgctaaagaaaaatttacgttggtacgaccattacctaaccctaacttaggcactatatccgagaccccacggcgagat gttgctgtgcaagctctgcctaaagagacagttaatgtggtgaaaccccttcaggcagaaaattcaaacggtcaaactct caaaagggacgttggcattcaaggtattgtaggaatgctcttagattgtttgagaatgacaaaacatgtgatgtgtgatg tttacatgcacgatgtttttcaaaaatga |
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Protein
| Protein ID | pfu_aug2.0_344.1_14029.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_344.1_14029.t1 MDKPKEHDTRQRTASSELSGEFDLIVNEINDFIAILEERGQQFQNKEAEARLQSKSKEAEARLQSKSKESEDRTASKSKE AELRTQKPEREDNALEAVDISEDSEDSELSISPRNTVIHIEDTDLFLTEQESSEPIYESFDDVKENDYEAIKGPPLKVKA VATANLIPQKPALKPKPKNLHKTMEPNQHTRRVKALHNFKGTNNDELCFMKGDIITVTQTMEGGWWEGTLNGKTGWFPSN YIKEIRADIVSTEIPGGKRSSGAVKGSDVQAYKRESMQYYHNVVLQNVIDTEKTHVQELTTVLQTYIQPIHSSSILSSAE YTQLVGNLEEIVTFQNSFLSSLEDCMKQPPYQRRVGGVFMKHAPRLKELYMAYSANHPRAAAILQNKRDDLNKFMDSLGV SKGAMTLTTNLYKPFTRLDKYPSLLKELERHVEESHVDRGDTQRAIAVYRDIANACMEIRKTKEMEYEILTSAIKGWEGE EIAKLGEVIHLSQVQVQTLAGDKFDRIFVLFPSVLVMLSMSPRLSGYQYEGQLPLSGMNVCLCEGEEGEQDNSFEISGNM IEKITVTCGTRTEAVAWIDSLSQQVNVTQISGTTKPQSLQLKNDWSDPYDPRTMEEDAVILKVIEAYCSARRRNDVNSLD LKKLKVNEDGTIEGYGDMIISPESEEYHILHGNPGMIGGFCCSFPLAKAIAKEKFTLVRPLPNPNLGTISETPRRDVAVQ ALPKETVNVVKPLQAENSNGQTLKRDVGIQGIVGMLLDCLRMTKHVMCDVYMHDVFQK |
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| Protein ID | pfu_aug2.0_344.1_14029.t2 |
| Definition | - |
>pfu_aug2.0_344.1_14029.t2 MDKPKEHDTRQRTASSELSGEFDLIVNEINDFIAILEERGQQFQNKEAEARLQSKSKEAEARLQSKSKESEDRTASKSKE AELRTQKPEREDNALEAVDISEDSEDSELSISPRNTVIHIEDTDLFLTEQESSEPIYESFDDVKENDYEAIKGPPLKVKA VATANLIPQKPALKPKPKNLHKTMEPNQHTRRVKALHNFKGTNNDELCFMKGDIITVTQTMEGGWWEGTLNGKTGWFPSN YIKEIRADIVSTEIPGGKRSSGAVKGSDVQAYKRESMQYYHNVVLQNVIDTEKTHVQELTTVLQTYIQPIHSSSILSSAE YTQLVGNLEEIVTFQNSFLSSLEDCMKQPPYQRRVGGVFMKHAPRLKELYMAYSANHPRAAAILQNKRDDLNKFMDSLGV SKGAMTLTTNLYKPFTRLDKYPSLLKELERHVEESHVDRGDTQRAIAVYRDIANACMEIRKTKEMEYEILTSAIKGWEGE EIAKLGEVIHLSQVQVQTLAGDKFDRIFVLFPSVLVMLSMSPRLSGYQYEGQLPLSGMNVCLCEGEEGEQDNSFEISGNM IEKITVTCGTRTEAVAWIDSLSQQVNVTQISGTTKPQSLQLKNDWSDPYDPRTMEEDAVILKVIEAYCSARRRNDVNSSI AKEKFTLVRPLPNPNLGTISETPRRDVAVQALPKETVNVVKPLQAENSNGQTLKRDVGIQGIVGMLLDCLRMTKHVMCDV YMHDVFQK |
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| Protein ID | pfu_aug2.0_344.1_14029.t3 |
| Definition | - |
>pfu_aug2.0_344.1_14029.t3 MDKPKEHDTRQRTASSELSGEFDLIVNEINDFIAILEERGQQFQNKEAEARLQSKSKEAEARLQSKSKESEDRTASKSKE AELRTQKPEREDNALEAVDISEDSEDSELSISPRNTVIHIEDTDLFLTEQESSEPIYESFDDVKENDYEAIKGPPLKVKA VATANLIPQKPALKPKPKNLHKTMEPNQHTRRVKALHNFKGTNNDELCFMKGDIITVTQTMEGGWWEGTLNGKTGWFPSN YIKEIRADIVSTEIPGGKRSSGAVKGSDVQAYKRESMQYYHNVVLQNVIDTEKTHVQELTTVLQTYIQPIHSSSILSSAE YTQLVGNLEEIVTFQNSFLSSLEDCMKQPPYQRRVGGVFMKHAPRLKELYMAYSANHPRAAAILQNKRDDLNKFMDSLGV SKGAMTLTTNLYKPFTRLDKYPSLLKELERHVEESHVDRGDTQRAIAVYRDIANACMEIRKTKEMEYEILTSAIKGWEGE EIAKLGEVIHLSQVQVQTLAGDKFDRIFVLFPSVLVMLSMSPRLSGYQYEGQLPLSGMNVCLCEGEEGEQDNSFEISGNM IEKITVTCGTRTEAVAWIDSLSQQVNVTQISGTTKPQSLQLKNDWSDPYDPRTMEEDAVILKVIEAYCSARRRNDVNSLP NYLDLKKLKVNEDGTIEGYGDMIISPESEEYHILHGNPGMIGGFCCSFPLAKAIAKEKFTLVRPLPNPNLGTISETPRRD VAVQALPKETVNVVKPLQAENSNGQTLKRDVGIQGIVGMLLDCLRMTKHVMCDVYMHDVFQK |
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