Gene
| Gene Model ID | pfu_aug2.0_344.1_14030 |
|---|---|
| Locus | scaffold344.1 : 250501 ... 260517 : + |
| To GenomeBrowser | scaffold344.1:250501..260517 |
| Genes list of scaffold | scaffold344.1 |
| Synonym | pfu_aug1.0_36741.1_70209 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_344.1_14030.t1 | 2 | 1 | vWA-TerF-like | 51 | 68 | 6.4e-15 | 55.5 | 1.3 | 3800.0 | -2.6 |
| pfu_aug2.0_344.1_14030.t1 | 1 | 1 | Copine | 110 | 245 | 3.19496e-43 | 146.9 | 0.0 | 5.395e-43 | 146.2 |
| pfu_aug2.0_344.1_14030.t1 | 2 | 2 | vWA-TerF-like | 136 | 305 | 6.4e-15 | 55.5 | 4.8e-18 | 1.4e-14 | 54.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_344.1_14030.t1 | gi|115610736|ref|XP_790376.2| | 0.0 | |
| pfu_aug2.0_344.1_14030.t1 | gi|291234817|ref|XP_002737345.1| | PREDICTED: copine family protein 2-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_344.1_14030.t1 | gi|260784415|ref|XP_002587262.1| | hypothetical protein BRAFLDRAFT_129123 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_344.1_14030.t1 | gi|676454279|ref|XP_009053629.1| | hypothetical protein LOTGIDRAFT_116463 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_344.1_14030.t1 | gi|675192103|ref|XP_008904936.1| | hypothetical protein PPTG_11388 [Phytophthora parasitica INRA-310] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_344.1_14030.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_344.1_14030.t1 atggaaccaataagtttattcatttttggaggaatcatattcctcatttggtacttctgtggtagtggaagttcaggagg tcataggtcatcaaggtcaggtcaaaagggggagagactttaccctgacctacagaaaatgcagagtaatagcgtcttca aaatgtttggagggaacagttacaatgcaatcatagatagatttactaacctagatgatgtgagggacgctataaggaag gcaggattggagtcatgtaatctgatatttggtatagactatactcaaagcaatgcatatcaggggatgagaacttttga tggtaaaagtttacacactgttggacccatgtttatgaacccgtatcaacaggtgatatgtatcctgggagagactttag aaccgtttgacgatgacggaattattccggcgtttggatttggtgacgcctctacgagagatcgagctgtgtttccattc agacaacagggatattgtcagggttttaatgacgtgttagatgcctacattcagatcgcacaaaatgtcaaattaagcgg aggtacaaacttcgcccctctcattcatcaggccatagacattgtgaaaaagacaaaatcgtatcacatactagtcatcg tagcagatggacaggtcaccagtgaaagagacacagtaaacgccattgccgaggcatcaaaatggccgctctcgataatc atggtcggtgtaggagatggaccgtgggatgtaatggaagactttgatgatagaatacccaataggaatttcgataactt ccagtttgttgactttcataaagtaatgactactgcacgaaatccacaggctgcgtttgcgttgaacgctcttatggaaa tacctgatcagtataaaatgataagagagaagggaatgctcaacttctaa |
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Protein
| Protein ID | pfu_aug2.0_344.1_14030.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_344.1_14030.t1 MEPISLFIFGGIIFLIWYFCGSGSSGGHRSSRSGQKGERLYPDLQKMQSNSVFKMFGGNSYNAIIDRFTNLDDVRDAIRK AGLESCNLIFGIDYTQSNAYQGMRTFDGKSLHTVGPMFMNPYQQVICILGETLEPFDDDGIIPAFGFGDASTRDRAVFPF RQQGYCQGFNDVLDAYIQIAQNVKLSGGTNFAPLIHQAIDIVKKTKSYHILVIVADGQVTSERDTVNAIAEASKWPLSII MVGVGDGPWDVMEDFDDRIPNRNFDNFQFVDFHKVMTTARNPQAAFALNALMEIPDQYKMIREKGMLNF |
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