Gene
| Gene Model ID | pfu_aug2.0_345.1_17310 |
|---|---|
| Locus | scaffold345.1 : 11826 ... 23026 : + |
| To GenomeBrowser | scaffold345.1:11826..23026 |
| Genes list of scaffold | scaffold345.1 |
| Synonym | pfu_aug1.0_5299.1_23751 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_345.1_17310.t2 | 3 | 1 | C1q | 79 | 161 | 0.0 | 196.1 | 3.6e-13 | 1.8e-09 | 37.6 |
| pfu_aug2.0_345.1_17310.t2 | 3 | 2 | C1q | 176 | 304 | 0.0 | 196.1 | 1.5e-25 | 7.6e-22 | 77.6 |
| pfu_aug2.0_345.1_17310.t2 | 3 | 3 | C1q | 323 | 445 | 0.0 | 196.1 | 9.2e-28 | 4.5e-24 | 84.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_345.1_17310.t2 | gi|736170136|ref|XP_010765592.1| | PREDICTED: nodal modulator 1-like [Notothenia coriiceps] | 2.0e-19 |
| pfu_aug2.0_345.1_17310.t2 | gi|242025644|ref|XP_002433234.1| | carboxypeptidase regulatory region-containing protein, putative [Pediculus humanus corporis] | 3.0e-19 |
| pfu_aug2.0_345.1_17310.t2 | gi|658832101|ref|XP_008407466.1| | PREDICTED: LOW QUALITY PROTEIN: nodal modulator 1-like [Poecilia reticulata] | 3.0e-19 |
Transcript
| Transcript ID | pfu_aug2.0_345.1_17310.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_345.1_17310.t1 atgattgctttttgtgacaggattggtcctctacacagtggtaaggagtatgaagtatcagcagagaaggatggttttga cattgtgaaggaagatggtactcaagctaaatttaaggctaccatgcatggaaaaattactgtaaaagtgatgagtgaca gtagtgagcccttgtctacagtgttattgtccctcagcggggggcatcagtatcgcagtaacaacgtaacagatgataca ggatctgtcacatttacaggactgagtgttggccagtacttcctacgaccaatgatgaaagagtatcgttttgatcctgc ctctcagatgttagaaatccatcaaggaataaacaaccccatcacaatcaaaggtgtaagggtggctttcagtttcaata tgttctcattaaccatgagtgacgtcaacgtctggcttgaactgttcaaaaacgatcagatagttgcatctctattcggt aacacacctcaagattatgccgatgctgggaactccgttatattacacctgaatgccgaagaccgcatcgatgtccgagc tcattcaaattataccacacatctttttggaacaactgatcaagtgtataccacatttacaggagttttattaagtccag atttccagattgacaatcagattggaaaaagagaggcattttctgtcggtcttactcatcactttcacttagaacatgga gaaattgtggtttataatgatgttattactaatatatcaacttccattggatatgacgtcaaaactggaaaatatcatgc cccagttgagggaatctacattttcttttaccattccctcgcacagtcagacaaggcgttatggctcgaactgtaccaca atgatgactacgtcaattcagcatttggacacacaccgagtcgttatgccgatgctggtaattgtgctattctacatttg aggaaagatgacacggtttacatcaaaggaagaaacgagtttggaatagatctctatggaacatcggatgaaatctatga cacattttcaggcagcttgcttacagcttcatcatttgcatatccagaaataggttcatcgactgatgaggaagtagcct tctccgtaggattaactcatacaatgtctggaaccaagctaattttctacagaatttttatcaacatcgggaatggatac catgaaactactggtgtattcaacgctccaaagagcggaatctatgtattttattattatgctctctctacacagaataa ggtaatatatgtcgatctgtaccataattaccattatgtcaattcgttatatggccatattagcaatggatacgcaaacg gaggcaatgctgctacgctagaactgatgagtggggacaccgtctacattaaagttcgagatacaaactctgaattctat ggctcatcggacgaaatatattgtaccttttctggacattttgtcagcccatcgtttaaattccatccgggtcccatcgg ataa |
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| Transcript ID | pfu_aug2.0_345.1_17310.t2 |
| Definition | - |
>pfu_aug2.0_345.1_17310.t2 atgagtgacagtagtgagcccttgtctacagtgttattgtccctcagcggggggcatcagtatcgcagtaacaacgtaac agatgatacaggatctgtcacatttacaggactgagtgttggccagtacttcctacgaccaatgatgaaagagtatcgtt ttgatcctgcctctcagatgttagaaatccatcaaggaataaacaaccccatcacaatcaaaggtgtaagggtggctttc agtttcaatatgttctcattaaccatgagtgacgtcaacgtctggcttgaactgttcaaaaacgatcagatagttgcatc tctattcggtaacacacctcaagattatgccgatgctgggaactccgttatattacacctgaatgccgaagaccgcatcg atgtccgagctcattcaaattataccacacatctttttggaacaactgatcaagtgtataccacatttacaggagtttta ttaagtccagatttccagattgacaatcagattggaaaaagagaggcattttctgtcggtcttactcatcactttcactt agaacatggagaaattgtggtttataatgatgttattactaatatatcaacttccattggatatgacgtcaaaactggaa aatatcatgccccagttgagggaatctacattttcttttaccattccctcgcacagtcagacaaggcgttatggctcgaa ctgtaccacaatgatgactacgtcaattcagcatttggacacacaccgagtcgttatgccgatgctggtaattgtgctat tctacatttgaggaaagatgacacggtttacatcaaaggaagaaacgagtttggaatagatctctatggaacatcggatg aaatctatgacacattttcaggcagcttgcttacagcttcatcatttgcatatccagaaataggttcatcgactgatgag gaagtagccttctccgtaggattaactcatacaatgtctggaaccaagctaattttctacagaatttttatcaacatcgg gaatggataccatgaaactactggtgtattcaacgctccaaagagcggaatctatgtattttattattatgctctctcta cacagaataaggtaatatatgtcgatctgtaccataattaccattatgtcaattcgttatatggccatattagcaatgga tacgcaaacggaggcaatgctgctacgctagaactgatgagtggggacaccgtctacattaaagttcgagatacaaactc tgaattctatggctcatcggacgaaatatattgtaccttttctggacattttgtcagcccatcgtttaaattccatccgg gtcccatcggataa |
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Protein
| Protein ID | pfu_aug2.0_345.1_17310.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_345.1_17310.t1 MIAFCDRIGPLHSGKEYEVSAEKDGFDIVKEDGTQAKFKATMHGKITVKVMSDSSEPLSTVLLSLSGGHQYRSNNVTDDT GSVTFTGLSVGQYFLRPMMKEYRFDPASQMLEIHQGINNPITIKGVRVAFSFNMFSLTMSDVNVWLELFKNDQIVASLFG NTPQDYADAGNSVILHLNAEDRIDVRAHSNYTTHLFGTTDQVYTTFTGVLLSPDFQIDNQIGKREAFSVGLTHHFHLEHG EIVVYNDVITNISTSIGYDVKTGKYHAPVEGIYIFFYHSLAQSDKALWLELYHNDDYVNSAFGHTPSRYADAGNCAILHL RKDDTVYIKGRNEFGIDLYGTSDEIYDTFSGSLLTASSFAYPEIGSSTDEEVAFSVGLTHTMSGTKLIFYRIFINIGNGY HETTGVFNAPKSGIYVFYYYALSTQNKVIYVDLYHNYHYVNSLYGHISNGYANGGNAATLELMSGDTVYIKVRDTNSEFY GSSDEIYCTFSGHFVSPSFKFHPGPIG |
|
| Protein ID | pfu_aug2.0_345.1_17310.t2 |
| Definition | - |
>pfu_aug2.0_345.1_17310.t2 MSDSSEPLSTVLLSLSGGHQYRSNNVTDDTGSVTFTGLSVGQYFLRPMMKEYRFDPASQMLEIHQGINNPITIKGVRVAF SFNMFSLTMSDVNVWLELFKNDQIVASLFGNTPQDYADAGNSVILHLNAEDRIDVRAHSNYTTHLFGTTDQVYTTFTGVL LSPDFQIDNQIGKREAFSVGLTHHFHLEHGEIVVYNDVITNISTSIGYDVKTGKYHAPVEGIYIFFYHSLAQSDKALWLE LYHNDDYVNSAFGHTPSRYADAGNCAILHLRKDDTVYIKGRNEFGIDLYGTSDEIYDTFSGSLLTASSFAYPEIGSSTDE EVAFSVGLTHTMSGTKLIFYRIFINIGNGYHETTGVFNAPKSGIYVFYYYALSTQNKVIYVDLYHNYHYVNSLYGHISNG YANGGNAATLELMSGDTVYIKVRDTNSEFYGSSDEIYCTFSGHFVSPSFKFHPGPIG |
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